PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008269m
Common NameCISIN_1g006081mg, LOC102617759
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 572aa    MW: 62222.9 Da    PI: 8.4254
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008269mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR27.28e-091041291642
                TCR  16 kYCeCfaagkkCseeCkCedCkNkeek 42 
                        kYCeCfaag +C+  C+C +C+N+ e+
  orange1.1g008269m 104 KYCECFAAGIYCDG-CNCVNCHNNVEH 129
                        8*************.********9876 PP
2TCR512.8e-16174213140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  orange1.1g008269m 174 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFE 213
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.9E-1160129IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.45861214IPR005172CRC domain
PfamPF036383.1E-6104126IPR005172CRC domain
SMARTSM011141.8E-19174215IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12177212IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MRSPSQAMPQ WQARPQHVRM VNRVPHPVHK LPLPTLPPGK QESPRSRPRA NTDGKDGTPK  60
KQKQCNCRNS RCLKLDFVEI WINIYSNTSP GAHLNTQFKD NLVKYCECFA AGIYCDGCNC  120
VNCHNNVEHE VARQEAVGAT LERNPNAFRP KIASSPHGAQ DAREDAREAQ LAAKHNKGCH  180
CKKSGCLKKY CECFQANILC SENCRCLDCK NFEGSEERRA LFHGDHNGIA FMQRAANAAI  240
IGAVGSSGYG TLMTSNKRKS EELLFGVAAK DQSVIRNPQS QQGNNVQNSA VPCSQSVPVS  300
QTANASVLGS TKSALRSPLA DILQPQDMKE LCSLLVMVSS EATKTLTKKV GAMQTEREGS  360
RSSVASPIQE GEDSRKGHEV HNGIPDDRQS GNQMDVDGTS GSGSDGGDML NERPLSPGTR  420
ALMCDEEDSA FMQAGPQTGL ASKSTVQKSN AYASTRIYAE QERLILTRFR DFLNRLITCG  480
SIKETMCSPL VKSETRSQQK AVEDGTSRSG TEVRGYMEPC GYGSAKSAVS VTLEPSCTTT  540
SVSSRQNNDL PMRVGLSNGQ RVVDSEIRNR N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-276222311132Protein lin-54 homolog
5fd3_B2e-276222311132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385077.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-142TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067GJG00.0A0A067GJG0_CITSI; Uncharacterized protein
STRINGXP_006476073.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein