PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008766m
Common NameCISIN_1g006062mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 555aa    MW: 60914.7 Da    PI: 9.6584
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008766mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.7e-09439487348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  orange1.1g008766m 439 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 487
                        7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.494432491IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-13434494IPR009057Homeodomain-like
SuperFamilySSF466891.5E-16434503IPR009057Homeodomain-like
SMARTSM007178.3E-10436489IPR001005SANT/Myb domain
CDDcd116609.80E-20438488No hitNo description
PfamPF002493.4E-7439487IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLGRLEGAFS MKGLSNSENA EADAGKLNTH LESIEEMLTK AKQEESHLLA CGSPDHSSTY  60
VLVDGQCSDQ HDTLRGIDEK LQSEIPLQES DLSSQSLSKS LNNQPSIHGE CSNSSNGLVE  120
GQRSTSAVYT SSKPEFSRLM GEICLDNLSI KELHETFKAT FGRETTVKDK QWLKRRIAMG  180
LTNSCDVSTS SFIIKDNKLV SKGGEGSCNK EAIEDQAVKP VDGSGKESSL NPGSKMEDQQ  240
IVSSERLRTC SKDYSCADED PLKEQRNAKR IRKPTRRYIE ELSEVESKEH GGKSIASVKN  300
LGLGLMSSRS NTRPVRIASS NRITLRLDSL GGSGVQIPYV SRVRRSRPRK NVKALMEFHP  360
NGIGMAAKLV KEAVDVHSSE PNRESGGIVL KASSAPEQIQ QQGQNMEPKN KDPSVYTPDD  420
NPATVRAVKG GVRRKHHRAW TLSEVMKLVE GVSKYGAGRW SEIKRLAFAS YSYRTSVDLK  480
DKWRNLLKAS LAQTPPDSRM GARKHASSVP IPMPVLLRVR ELAEMQSQFP PNLSSSKLTG  540
SAGRNVNETR SGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343349RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.28800.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465936.10.0uncharacterized protein LOC102630482 isoform X2
TrEMBLA0A067FFZ80.0A0A067FFZ8_CITSI; Uncharacterized protein
STRINGXP_006465933.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-104TRF-like 6