PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008770m
Common NameCISIN_1g008680mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 555aa    MW: 60878.8 Da    PI: 8.3829
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008770mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41172247277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        Cqv gC++dls+ k+yh+rhkvCe+hska++v+v+++eqrfCqqCsrfh l+efD++krsCr+rLa+hnerrrk+q
  orange1.1g008770m 172 CQVYGCNKDLSSSKDYHKRHKVCEAHSKAAKVIVNEIEQRFCQQCSRFHFLDEFDDGKRSCRKRLAGHNERRRKPQ 247
                        **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-32166233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.787169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-37170250IPR004333Transcription factor, SBP-box
PfamPF031102.4E-31172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MEPWSYGSEG KGAVANDRIS PADSSSRSKG YLMGWELNTS CHNMLVSHRE APGNQSFGEF  60
GFQEVVGKRL TKDNPIKDVL SSKNHFMNPN MPTPTTSFGE DESTSKRSSS VVDSNSTLDS  120
SLIDLNLGRF VDQRDSHTSK FSHGTPKFSS SKSSAAPKRV RLSGISSHTA YCQVYGCNKD  180
LSSSKDYHKR HKVCEAHSKA AKVIVNEIEQ RFCQQCSRFH FLDEFDDGKR SCRKRLAGHN  240
ERRRKPQVGV HPGRTAKLLR SHEGCKFQGT TLPMSSFICP DILPGGIFYP EKCRTNDWCK  300
CVKVEDMNDY NAVSATSISK GNLHPKSFFP QYDFQKVVPP FHGNEVNAAT ESIFSATSAR  360
YPQDLGGPKS VSSPLFRDIS LGSEEFSIFD TPSTIQGLSR ISESGYAHPL LSSKSQNSPS  420
PLSGIPVARP LVIGGSGGAH YNISQVSEKL IGVSSQASTS QASNKFSLSG NNSFEGSNLG  480
SILMSDSSDA ANFDVSNRFY RGSDFMSSKD RLSCEDGATI DLLKLSSQLQ RVEHQNQFMQ  540
VKDENDSFCC LRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-28166245584squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.109470.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477710.10.0squamosa promoter-binding-like protein 12 isoform X2
RefseqXP_024043712.10.0squamosa promoter-binding-like protein 12 isoform X2
TrEMBLA0A067FR920.0A0A067FR92_CITSI; Uncharacterized protein
STRINGXP_006477709.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-51SBP family protein