PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g008961m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 548aa    MW: 59699 Da    PI: 6.7036
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g008961mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.2e-17297598
                       -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++lv+
  orange1.1g008961m  2 LSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVM 93
                       5789********************555566778***************9989999999***9.********************766.7777777 PP

                       EEE- CS
                 B3 95 kvfr 98
                       ++++
  orange1.1g008961m 94 GFRK 97
                       7776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.3E-15199IPR003340B3 DNA binding domain
PROSITE profilePS5086310.969199IPR003340B3 DNA binding domain
PfamPF023628.7E-15297IPR003340B3 DNA binding domain
CDDcd100177.08E-20297No hitNo description
Gene3DG3DSA:2.40.330.106.0E-282104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-17297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5105013.781226276IPR011124Zinc finger, CW-type
PfamPF074964.5E-11231273IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLSASDAGRI GRLVLPKKCA EAYFPPISQP EGLPLKVQDS KGKEWIFQFR FWPNNNSRMY  60
VLEGVTPCIQ NMQLQAGDIV TFSRLEPEGK LVMGFRKASS ASASDQDNEA NKAGTGIPAN  120
GHAELADPSS WSKVDKSGYI ATEALGAKSS ISRKRKNTTL GSKSKRLKIE NEDVIELKLT  180
WEEAQGLLRP PPNNVPSVVV IEGYEFEEYE DAPILGKPTI FATDNVGEKI QWVQCEDCSK  240
WRKVPANARL PSKWTCSGNL WDPERSVCSV AQELREEQLE DLIAPNNPAS SKKLKAAKQE  300
PDCVEALEGL DTLANLAILG EGEGLTASSQ ATTKHPRHRP GCSCIVCIQP PSGKGPKHKQ  360
TCTCNVCLTV KRRFHTLMLR REKKQSEKDA ETSRKKQQQQ KLPVPEKSAD DDPLSCSKTG  420
NNSPNEKKVV SEGSDDDSSR IKSSTSPFKG QIDLNIQPER EEELSPGSDS GSMIRLLQDA  480
TEKYLRQQRL SSSGVNTSSV DNEGLQGGVT GEKISNGITL DGSHQDTDED HHGSLSVKAS  540
ASISATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-54210127126B3 domain-containing transcription repressor VAL1
5yzz_C1e-54210127126B3 domain-containing transcription repressor VAL1
5z00_C1e-54210127126B3 domain-containing transcription repressor VAL1
5z00_G1e-54210127126B3 domain-containing transcription repressor VAL1
5z00_K1e-54210127126B3 domain-containing transcription repressor VAL1
5z00_M1e-54210127126B3 domain-containing transcription repressor VAL1
6j9a_A1e-54210128127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153167KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-135KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Z10.0A0A067G7Z1_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1