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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
orange1.1g008988m |
| Common Name | CISIN_1g008984mg, LOC102620670, LOC102621667 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 548aa MW: 61354.3 Da PI: 5.8074 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g008988m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 420.4 | 1.5e-128 | 177 | 547 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l+++L+ cA+avs+gd + a l+ l++++s +g+p++Rl ay++e+L+arl s+s++ykal++++ sse +++++++++++P+ k
orange1.1g008988m 177 LKQVLIFCAQAVSDGDISTAAGLMRVLEQMVSVSGEPIERLGAYMLEGLRARLEFSGSKIYKALKCEQPV---SSELMSYMSVLFQICPYWK 265
5799*****************************************************************8...999999999********** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
f+++ aN I eave+e+ +HiiDf+i qG+QW+ Ll+aLa+Rp+g+p +RiTg+++++s+ + l +g+rL++fA++++vpfef+ +
orange1.1g008988m 266 FAYMSANVVIGEAVENEHIIHIIDFQIAQGTQWMFLLHALAKRPGGSPLVRITGIDDSQSThaRGGGLDIVGKRLSEFAASCNVPFEFQD-T 356
*********************************************************9988889999***********************.8 PP
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
a + ++e ++Lrv+pgEa++Vn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rfle+l+yy+a+f+s++++
orange1.1g008988m 357 AMTACEVERQHLRVQPGEAVVVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESKTNTSPFFHRFLETLDYYTAMFESIDVT 448
999***************************************************************************************** PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
pr++++ri+ E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF+p++ls +++ ++ +l+ ++s+ yrvee++g+l+lgW++r+
orange1.1g008988m 449 RPRDDKQRISAEQHCVARDIVNMIACEGIERVERHELLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSN-YRVEENDGALYLGWRNRA 539
***********************************************************************77.****************** PP
GRAS 367 LvsvSaWr 374
+ + SaW+
orange1.1g008988m 540 MATSSAWK 547
*******8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 548 aa
Download sequence Send
to blast |
MQTSQKHQSA ASVQRMYHQP VQGIEPCCLS HVQILDNNIC SDVSSQGTNM SFQTYKEQFY 60
TLDSSTATTG FSHDSPSAVS ISSNRSTFSP QGSQSYQSDP HHSPDNAYGS PMSGSSIVDE 120
GNELRNKLRE LEISLLGPES DIIDSCSCCF KSGTHQDTSA ASWNWDQLME MIPRLDLKQV 180
LIFCAQAVSD GDISTAAGLM RVLEQMVSVS GEPIERLGAY MLEGLRARLE FSGSKIYKAL 240
KCEQPVSSEL MSYMSVLFQI CPYWKFAYMS ANVVIGEAVE NEHIIHIIDF QIAQGTQWMF 300
LLHALAKRPG GSPLVRITGI DDSQSTHARG GGLDIVGKRL SEFAASCNVP FEFQDTAMTA 360
CEVERQHLRV QPGEAVVVNF PFVLHHMPDE SVSTENHRDR LLRLVKSLSP KVVTLVEQES 420
KTNTSPFFHR FLETLDYYTA MFESIDVTRP RDDKQRISAE QHCVARDIVN MIACEGIERV 480
ERHELLGKWR SRFMMAGFTP YRLSPLVTNA VRDVLKDYDS NYRVEENDGA LYLGWRNRAM 540
ATSSAWK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
