PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009159m
Common NameCISIN_1g006081mg, LOC102617759
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 543aa    MW: 58876.1 Da    PI: 8.4892
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009159mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.3e-1561100242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+CnC++s+Clk+YCeCfaag +C+  C+C +C+N+ e+
  orange1.1g009159m  61 KQKQCNCRNSRCLKLYCECFAAGIYCDG-CNCVNCHNNVEH 100
                        89**************************.********9876 PP
2TCR51.12.6e-16145184140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  orange1.1g009159m 145 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFE 184
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-1960100IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.21661185IPR005172CRC domain
PfamPF036388.7E-126297IPR005172CRC domain
SMARTSM011141.8E-19145186IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-12148183IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRSPSQAMPQ WQARPQHVRM VNRVPHPVHK LPLPTLPPGK QESPRSRPRA NTDGKDGTPK  60
KQKQCNCRNS RCLKLYCECF AAGIYCDGCN CVNCHNNVEH EVARQEAVGA TLERNPNAFR  120
PKIASSPHGA QDAREDAREA QLAAKHNKGC HCKKSGCLKK YCECFQANIL CSENCRCLDC  180
KNFEGSEERR ALFHGDHNGI AFMQRAANAA IIGAVGSSGY GTLMTSNKRK SEELLFGVAA  240
KDQSVIRNPQ SQQGNNVQNS AVPCSQSVPV SQTANASVLG STKSALRSPL ADILQPQDMK  300
ELCSLLVMVS SEATKTLTKK VGAMQTEREG SRSSVASPIQ EGEDSRKGHE VHNGIPDDRQ  360
SGNQMDVDGT SGSGSDGGDM LNERPLSPGT RALMCDEEDS AFMQAGPQTG LASKSTVQKS  420
NAYASTRIYA EQERLILTRF RDFLNRLITC GSIKETMCSP LVKSETRSQQ KAVEDGTSRS  480
GTEVRGYMEP CGYGSAKSAV SVTLEPSCTT TSVSSRQNND LPMRVGLSNG QRVVDSEIRN  540
RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-336219411132Protein lin-54 homolog
5fd3_B4e-336219411132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476073.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-149TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067GJ650.0A0A067GJ65_CITSI; Uncharacterized protein
STRINGXP_006476073.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-134Tesmin/TSO1-like CXC domain-containing protein