PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009504m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 534aa    MW: 58370.4 Da    PI: 6.4355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009504mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1116833198
                       .--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 31 eesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++lv+++++
  orange1.1g009504m 16 PEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRK 83
                       4555699*************9989999999***9.********************766.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.63E-11183No hitNo description
PROSITE profilePS508639.897185IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-10583IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.005585IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-19790IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-91783IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781212262IPR011124Zinc finger, CW-type
PfamPF074964.4E-11217259IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MHLPMMQAYF PPISQPEGLP LKVQDSKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQNMQL  60
QAGDIVTFSR LEPEGKLVMG FRKASSASAS DQDNEANKAG TGIPANGHAE LADPSSWSKV  120
DKSGYIATEA LGAKSSISRK RKNTTLGSKS KRLKIENEDV IELKLTWEEA QGLLRPPPNN  180
VPSVVVIEGY EFEEYEDAPI LGKPTIFATD NVGEKIQWVQ CEDCSKWRKV PANARLPSKW  240
TCSGNLWDPE RSVCSVAQEL REEQLEDLIA PNNPASSKKL KAAKQEPDCV EALEGLDTLA  300
NLAILGEGEG LTASSQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF  360
HTLMLRREKK QSEKDAETSR KKQQQQKLPV PEKSADDDPL SCSKTGNNSP NEKKVVSEGS  420
DDDSSRIKSS TSPFKGQIDL NIQPEREEEL SPGSDSGSMI RLLQDATEKY LRQQRLSSSG  480
VNTSSVDNEG LQGGVTGEKI SNGITLDGSH QDTDEDHHGS LSVKASASIS ATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C7e-4178746126B3 domain-containing transcription repressor VAL1
5yzz_C7e-4178746126B3 domain-containing transcription repressor VAL1
5z00_C7e-4178746126B3 domain-containing transcription repressor VAL1
5z00_G7e-4178746126B3 domain-containing transcription repressor VAL1
5z00_K7e-4178746126B3 domain-containing transcription repressor VAL1
5z00_M7e-4178746126B3 domain-containing transcription repressor VAL1
6j9a_A8e-4178747127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139153KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-135KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G41e-173Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G8590.0A0A067G859_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-130HSI2-like 1