PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g009693m
Common NameCISIN_1g007452mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 529aa    MW: 55108.7 Da    PI: 5.526
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g009693mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09129174145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 
                        r++WT+eEd+ l+ av++ G g+W+ I r      Rt+ q+  rw+
  orange1.1g009693m 129 RKPWTAEEDLELISAVQKCGEGNWANILRGDFkWDRTASQLSQRWN 174
                        789************************9843235677777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.616124181IPR017930Myb domain
SuperFamilySSF466892.62E-13125178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-14125179IPR009057Homeodomain-like
SMARTSM007171.8E-10128179IPR001005SANT/Myb domain
PfamPF002492.8E-8129174IPR001005SANT/Myb domain
CDDcd116605.18E-13130178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MVIYVVYNEL FHMQDDDSDL EYELEAFPEV SSEASTEAAA CVKVLIASGL PSDSSLPNSS  60
MVEAPLTINI PNGQSLRAST ENSQPSSLMQ GMNITVPVAV QKVPLPAPTP EVLDANGLIG  120
GSMPPRKKRK PWTAEEDLEL ISAVQKCGEG NWANILRGDF KWDRTASQLS QRWNILRKKH  180
GNVILGSNSS GSQLSEAQLA ARHAMSLALD MPVKNITASC TNTTAGTTSS ATMNNPVPST  240
ANAEASSVAN QSKLSPVGSP GSAVKSRVPL KKMPAKSNFG ADSSIRAAAV AAGARIVTPS  300
DAASLLKVAQ AKKAIHIMPS GVSSIKSPSA GSASAHLEAS PTTRYVRPSL PAVPSSSSPA  360
VTSSASHPGL VKAALPKVQH NTSCEQTNAV VSVPATELQL KPEVKAGEEI KVSGCSVSGN  420
EPSKEIQLDL PKLDAEFKNQ AAVAENPDSS SNMEIVENGQ VQSNGNQPEG NGNQNGNDDK  480
MVDSPVANGE NQAAVKQKNS GLPQSSNNEE AELPTLVIDK CSSKNLEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130PRKKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952686.10.0uncharacterized protein LOC102617361 isoform X2
TrEMBLA0A067H0Y40.0A0A067H0Y4_CITSI; Uncharacterized protein
STRINGXP_006472453.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-46MYB_related family protein