PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010039m
Common NameCISIN_1g010039mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 520aa    MW: 57081.8 Da    PI: 6.2892
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010039mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.8e-14251310155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  orange1.1g010039m 251 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 310
                        57*******************666664478446**********99*************98 PP
2AP239.51.4e-12342387755
                AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        r+++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  orange1.1g010039m 342 RRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 387
                        89**********988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.77E-22251320No hitNo description
SuperFamilySSF541713.6E-17251320IPR016177DNA-binding domain
PfamPF008472.1E-11251310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-16252319IPR001471AP2/ERF domain
PROSITE profilePS5103219.137252318IPR001471AP2/ERF domain
SMARTSM003801.6E-27252324IPR001471AP2/ERF domain
PRINTSPR003671.7E-6253264IPR001471AP2/ERF domain
PROSITE profilePS5103216.621328395IPR001471AP2/ERF domain
PfamPF008474.6E-7341387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-16343395IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-15343396IPR016177DNA-binding domain
SMARTSM003802.9E-24343401IPR001471AP2/ERF domain
PRINTSPR003671.7E-6377397IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAPASNWLSF SLSPMEMWRS SSSSDSQFLP YDASQSAASP HYFLDNFYAN AAGWTNPKSQ  60
VFFTEEENIQ AKELEVAAAQ TMAADSSILP SLTQTHPVPK LEDFFADSSS LVHSQTETQD  120
SSLTHIYDHH HHGSAYFNDH QQDLKAIAGF QAFSTNSGSE VDDSTSMTRT QLPAAEFVGH  180
SIESTGNELG FSNSCPTTGC LSLGVNNNAT NNANSNNNVN KNQGCNEKKA IVSADSDCTK  240
KVADTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARA  300
YDLAALKYWG PTATTNFPVS GYTKELEEMK HVTKQEFIAS LRRHHQQGRW QARIGRVAGN  360
KDLYLGTFAT EEEAAEAYDI AAIKFRGANA VTNFEMNRYD VEAIGKSSLP IGGAAKRLKL  420
SLESEQKLAL TQDQQPQCSS SSNNINFAAL QPVGPASIPC GIPFDAATAA ALYHQNLYHH  480
FQTTNFNPAD SPGSTSSMAP PVALMQQPAE FFLWPHQSY*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024036659.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X3
SwissprotQ52QU21e-178AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A067F3410.0A0A067F341_CITSI; Uncharacterized protein
STRINGXP_006466326.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-176AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]