PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010081m
Common NameCISIN_1g006062mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 519aa    MW: 57082.4 Da    PI: 9.9496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010081mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09403451348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  orange1.1g010081m 403 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 451
                        7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.494396455IPR017930Myb domain
SuperFamilySSF466891.42E-16398467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-13398458IPR009057Homeodomain-like
SMARTSM007178.3E-10400453IPR001005SANT/Myb domain
CDDcd116609.01E-20402452No hitNo description
PfamPF002493.1E-7403451IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLTKAKQEES HLLACGSPDH SSTYVLVDGQ CSDQHDTLRG IDEKLQSEIP LQESDLSSQS  60
LSKSLNNQPS IHGECSNSSN GLVEGQRSTS AVYTSSKPEF SRLMGEICLD NLSIKELHET  120
FKATFGRETT VKDKQWLKRR IAMGLTNSCD VSTSSFIIKD NKLVSKGGEG SCNKEAIEDQ  180
AVKPVDGSGK ESSLNPGSKM EDQQIVSSER LRTCSKDYSC ADEDPLKEQR NAKRIRKPTR  240
RYIEELSEVE SKEHGGKSIA SVKNLGLGLM SSRSNTRPVR IASSNRITLR LDSLGGSGVQ  300
IPYVSRVRRS RPRKNVKALM EFHPNGIGMA AKLVKEAVDV HSSEPNRESG GIVLKASSAP  360
EQIQQQGQNM EPKNKDPSVY TPDDNPATVR AVKGGVRRKH HRAWTLSEVM KLVEGVSKYG  420
AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LKASLAQTPP DSRMGARKHA SSVPIPMPVL  480
LRVRELAEMQ SQFPPNLSSS KLTGSAGRNV NETRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.28800.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465936.10.0uncharacterized protein LOC102630482 isoform X2
TrEMBLA0A067FFZ80.0A0A067FFZ8_CITSI; Uncharacterized protein
STRINGXP_006465933.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-103TRF-like 6