PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010726m
Common NameCISIN_1g010726mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 503aa    MW: 57052.4 Da    PI: 4.4899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010726mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS151.86.3e-471405013374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lL +  eav++++ ela+ ++  ls+ asp+g+ ++Rla  +    +    ++++ l+     +e+     ++  aa+k+f++++P+ +f+
  orange1.1g010726m 140 HLLQAYGEAVEKEQRELADVIIRCLSDKASPAGEILERLAYNL----SPDFEKKGDYLM-----QES----RKNFEAAFKAFYQIFPYGRFA 218
                        8899999********************************9875....555555333333.....333....356778999************ PP

               GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnv 180
                        h++aN+aIle++  + e+vHi+Dfd+++G+QWp++++a+a +     +lR+T v+ ++s+     ++ + eet+++L ++A+ +g++++ + 
  orange1.1g010726m 219 HFAANSAILESIPDDaEHVHIVDFDMGEGIQWPSMIEAMARQ---NRTLRLTSVKIEDSEfarvpRQWSFEETRKQLCDYARDFGLKLKVEE 307
                        ************8877************************86...457*******9888899999999*********************999 PP

               GRAS 181 lvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl...sPkvvvvveqe.adh..nsesFlerfleale 262
                        +   ++e+l ++e++ k+    +E  + n++++l ++  +s  ++++  e+L++ k++   s  +v++ + + ++   +s+ F   f   le
  orange1.1g010726m 308 M---DFEEL-VWEMKRKKkgcsKEWSVFNCIVELPHMG-RSR-SRKHVIEFLQVAKEMlcrSGGIVTLGDGDaCEKliGSSGFGSFFEGYLE 393
                        7...99999.777777777999***************8.333.444479********9444556******996444579************* PP

               GRAS 263 yysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                        +y a+++s+++++p++   +r+ +E  ++++ i++     g    ++ e+ ++  +    +G+++ ++s+   ++ak l++  +s + ++  
  orange1.1g010726m 394 HYQAVLESMKTSFPTQLaGARMAMECLFVAPYISS----HGWL--QKWEEIRQGYHLQAGFGLEKCEVSKGFLMEAKELMKGESSYEVTIGg 479
                        *************9997799*****9988887765....4544..5556788888899999********************99966566667 PP

               GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                        +++++++l W++ pLv vSaWr
  orange1.1g010726m 480 QSKNEIILEWRGTPLVRVSAWR 501
                        8899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.648112480IPR005202Transcription factor GRAS
PfamPF035142.2E-44140501IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MTQQEFLQPS WPFHTVINST LDDELGTCDF NFDDDTSDYS LTSNLSYLFS NEMTPFPPCD  60
DELQAMMNEF SMELGNFESV FSDKVKDFGT SFDNSEGSLS LLSQVSSPST PTKSSEASMD  120
STVTFLGEDM EIDNQLGVLH LLQAYGEAVE KEQRELADVI IRCLSDKASP AGEILERLAY  180
NLSPDFEKKG DYLMQESRKN FEAAFKAFYQ IFPYGRFAHF AANSAILESI PDDAEHVHIV  240
DFDMGEGIQW PSMIEAMARQ NRTLRLTSVK IEDSEFARVP RQWSFEETRK QLCDYARDFG  300
LKLKVEEMDF EELVWEMKRK KKGCSKEWSV FNCIVELPHM GRSRSRKHVI EFLQVAKEML  360
CRSGGIVTLG DGDACEKLIG SSGFGSFFEG YLEHYQAVLE SMKTSFPTQL AGARMAMECL  420
FVAPYISSHG WLQKWEEIRQ GYHLQAGFGL EKCEVSKGFL MEAKELMKGE SSYEVTIGGQ  480
SKNEIILEWR GTPLVRVSAW RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481093.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A067F7D60.0A0A067F7D6_CITSI; Uncharacterized protein
STRINGXP_006481093.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-21GRAS family protein