PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010763m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 503aa    MW: 55130 Da    PI: 7.8546
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010763mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.6e-16177226155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g010763m 177 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 226
                        78*******************......55************************997 PP
2AP241.43.5e-13269319155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+       g    +k+++lg f+ + eAa+a+++a+ k +g
  orange1.1g010763m 269 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDNEAEAARAYDKAAIKQNG 319
                        89********.7******...5...334336**********99**********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-15177234IPR016177DNA-binding domain
PfamPF008471.8E-8177226IPR001471AP2/ERF domain
PROSITE profilePS5103216.99178234IPR001471AP2/ERF domain
SMARTSM003801.0E-30178240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-16178233IPR001471AP2/ERF domain
CDDcd000181.16E-22178233No hitNo description
CDDcd000187.88E-24269329No hitNo description
SuperFamilySSF541715.56E-16269328IPR016177DNA-binding domain
PfamPF008471.2E-8269319IPR001471AP2/ERF domain
SMARTSM003802.1E-28270333IPR001471AP2/ERF domain
PROSITE profilePS5103215.488270327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-15270327IPR001471AP2/ERF domain
PRINTSPR003671.0E-5271282IPR001471AP2/ERF domain
PRINTSPR003671.0E-5309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLDLNLDIAS CESSSICEDK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA  60
SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAATI LDDKAVPITR QLFPVTGAGS  120
TTSATTGQWL NLSCATAAAA ADDVDDESAA GGQELKPVQQ KPQQVRKSRR GPRSRSSQYR  180
GVTFYRRTSR WESHIWDCGK QVYLGGFDTA HSAARAYDRA AIKFRGVDAD LNFGVTDYEE  240
DMKQMKHLSK EEFVLILRRQ SNGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF  300
DNEAEAARAY DKAAIKQNGR EALTNFEPSA YQRETLLDSN NGGSSNNLNL DLSIGISQPS  360
STIYCEACQM PNKERRVLDS TVYASMGVQL QPHHPHHGLT MPPQSHEEMA KEKRVQGVSS  420
PGFTNWAWQM HNNGSVAAMP VNLLSSAASS GFSSSPTTAP AANTIQVQQQ INNNPAARNM  480
FLATQNTSAA IDNSHHLRNY RS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436192.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_006485948.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AMA91e-105AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A2H5NZH30.0A0A2H5NZH3_CITUN; Uncharacterized protein
TrEMBLV4T8670.0V4T867_9ROSI; Uncharacterized protein
STRINGXP_006485948.10.0(Citrus sinensis)
STRINGXP_006436192.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-73related to AP2.7