PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010865m
Common NameCISIN_1g009653mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 499aa    MW: 55751.6 Da    PI: 8.2136
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010865mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.7e-42180255277
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        Cqv gC++dls+ k+yh+rhkvC+vhsk+p+v+v+g eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q
  orange1.1g010865m 180 CQVYGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGNEQRFCQQCSRFHLLAEFDDSKRSCRRRLAGHNERRRKPQ 255
                        **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33174241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.727177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-39178258IPR004333Transcription factor, SBP-box
PfamPF031107.3E-32180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MESWIYGSEG KGILYSDEVD SSVDPFTRSR KTLMAWESKP SYNFDINKLF SDSDDVENME  60
FMDLCFTDLT RKPCHSNSSL GTPNGEVGSD TNERLTTTPC MVTSNSFCGP ESGSKISSSC  120
MKSISQDSAL IDLKLGRLVD GRDKQCGKLF KERSVASSAH PSLMAKKVRT TSSCSQTPLC  180
QVYGCNKDLS SSKDYHKRHK VCDVHSKTPK VIVNGNEQRF CQQCSRFHLL AEFDDSKRSC  240
RRRLAGHNER RRKPQFNIHS DRSRSELPWT SLQNGTSFVY PDMLPGGILF PERYEPVKQI  300
KFSERPPYSP QLAVPNTNEQ LLTKSSLYQG NKKQHRLAIP LDTALTFQDS SGISHSSGAL  360
SLLSAQSQSM PNHLSGIPMA RPLISQVSHT HLNLGQNFVK TSGTTPLGKY ETKGFYTSGM  420
NSMDGAQMRS LMVPDAGHAF ELKVETDEVS QESDFFKDKN CYSPEQGFTV DLIQLSSHLK  480
RVEQQRNSIQ PKQHTDDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29171253284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4634661e-43AM463466.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X160637.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956108.10.0squamosa promoter-binding-like protein 6 isoform X3
TrEMBLA0A067FSF70.0A0A067FSF7_CITSI; Uncharacterized protein
STRINGXP_006484237.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.12e-50SBP family protein