PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g010979m
Common NameCISIN_1g010979mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 497aa    MW: 53320.1 Da    PI: 7.1961
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g010979mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC758e-24204247144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+ep+rCrRtDGKkWRCsr+v + +k+CErH h++r rsrk++e
  orange1.1g010979m 204 DPEPWRCRRTDGKKWRCSRDVAPEQKYCERHSHKSRPRSRKPVE 247
                        79***************************************987 PP
2QLQ576e-20137172237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        aFTaaQlq+L++Q l+yKy++a++P+P+eLl++i+k
  orange1.1g010979m 137 AFTAAQLQELERQTLIYKYMMASAPIPHELLLPITK 172
                        7*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-10136172IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.9E-14137170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.754137172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.826204248IPR014977WRC domain
PfamPF088794.5E-19205247IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MQESSSCSRS CSCTTSTSTS SNSAVNYDIN NNNNHQSPQL LLSSSSTSCE KLTAAGGASG  60
CGGSMFCNAS NQVACMSDIY DVVGAASRSG TNSAAAVLAS KSLSPPSITD SFFHFNSSAS  120
ASGEMAAAAA AVNLRLAFTA AQLQELERQT LIYKYMMASA PIPHELLLPI TKSPSTSRVL  180
PSCQPNMVQG SMELRLLSNN SSSDPEPWRC RRTDGKKWRC SRDVAPEQKY CERHSHKSRP  240
RSRKPVELPA HRGHNSSLHQ SVHNSTLNKS YPKYMASSIA LSEQQEQPRS LEWFMKGETM  300
PVASNSNQEW LQNTSKYGGH HHHHKEHLIN SNNLSGDDLA FDAQRLHDQY SLLLSPKMVS  360
HHAQQTQETR HFIDAWSLGL GGENMADEDG MGSTSNCFVS SNEKLPLSSL TLSMSGGNET  420
IERNENALMA SLGTMGSERE NAGALRPHWM NHVSGMGSPP GGPLAEVLCL GTASSVKSDS  480
NAASPHGCST STTTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085415e-52DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476277.10.0growth-regulating factor 7-like isoform X1
TrEMBLA0A067GMX20.0A0A067GMX2_CITSI; Uncharacterized protein
STRINGXP_006476277.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-31growth-regulating factor 8