PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011009m
Common NameCISIN_1g010454mg, LOC102606994
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 496aa    MW: 53509.7 Da    PI: 6.7944
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011009mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17171220155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g011009m 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-9171220IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-15171229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-17172228IPR001471AP2/ERF domain
PROSITE profilePS5103217.794172228IPR001471AP2/ERF domain
SMARTSM003804.5E-31172234IPR001471AP2/ERF domain
CDDcd000183.72E-11172227No hitNo description
SuperFamilySSF541712.16E-6263307IPR016177DNA-binding domain
CDDcd000184.89E-13263308No hitNo description
SMARTSM003805.7E-13264312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAASR KEFAFFPASG GGENGGGQSS  120
GSWIDLSFDK QQQQYQNQQP QQQEGGGEVR VTQQSSPVVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK  240
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKAYD KAAIKCNGRE  300
AVTNFEPSTY EGEMITEGSN EGGDHNLDLN LGISSSFGSG PKANEGHSQF LSGPYGAHGG  360
RTSRTENSTT AAVGDSASKG LMRTSEHPIF WNGAYPGLLT TEEKATEKRI ELGPPQGLPN  420
WAWQMHGQVS GTPASLLSSA ASSGFPFSAA PPSAAVLSSK PLNPSDVNLC FTSTNTTAPN  480
TSQFYYQMKL PQAPP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.171260.0callus| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488204.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-123RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A067G3U20.0A0A067G3U2_CITSI; Uncharacterized protein
STRINGXP_006424678.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-113related to AP2.7