PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011372m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 488aa    MW: 53417.1 Da    PI: 8.2778
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011372mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16177226155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++ rW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g011372m 177 SQYRGVTFYRRTSRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 226
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-8177226IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-15177234IPR016177DNA-binding domain
PROSITE profilePS5103216.99178234IPR001471AP2/ERF domain
SMARTSM003801.0E-30178240IPR001471AP2/ERF domain
CDDcd000187.22E-23178233No hitNo description
Gene3DG3DSA:3.30.730.103.9E-16178233IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-6269313IPR016177DNA-binding domain
CDDcd000181.86E-12269314No hitNo description
SMARTSM003801.9E-10270318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MLDLNLDIAS CESSSICEDK NKKKINYSSN NNIKITAMQM EDSGTSNSSV INNEEAADNA  60
SNNHVSFPFV FGIFKKENED DDNNNNNYQP AASAAAAATI LDDKAVPITR QLFPVTGAGS  120
TTSATTGQWL NLSCATAAAA ADDVDDESAA GGQELKPVQQ KPQQVRKSRR GPRSRSSQYR  180
GVTFYRRTSR WESHIWDCGK QVYLGGFDTA HSAARAYDRA AIKFRGVDAD LNFGVTDYEE  240
DMKQMKHLSK EEFVLILRRQ SNGFARGSSK YRGVTLHKCG RWEARMGQLL GKKAYDKAAI  300
KQNGREALTN FEPSAYQRET LLDSNNGGSS NNLNLDLSIG ISQPSSTIYC EACQMPNKER  360
RVLDSTVYAS MGVQLQPHHP HHGLTMPPQS HEEMAKEKRV QGVSSPGFTN WAWQMHNNGS  420
VAAMPVNLLS SAASSGFSSS PTTAPAANTI QVQQQINNNP AARNMFLATQ NTSAAIDNSH  480
HLRNYRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436193.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
RefseqXP_006485949.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AMA92e-90AP22_ORYSI; APETALA2-like protein 2
TrEMBLV4SNQ00.0V4SNQ0_9ROSI; Uncharacterized protein
STRINGXP_006485948.10.0(Citrus sinensis)
STRINGXP_006436192.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-73related to AP2.7