PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g011928m
Common NameCISIN_1g011928mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 476aa    MW: 54332.6 Da    PI: 6.4095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g011928mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-16111198196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f k++++s+v+   +l lp +f++ ++   + ++  ++e+esg+++++++     s+r+ l++GWk F +an+L egD++vF+l++ ++f  
  orange1.1g011928m 111 FWKAMVKSNVSHGFWLHLPMRFCKFNMP--KIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF-- 194
                        6799*******************88863..477899**************....566778***********************9876666.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        +  +
  orange1.1g011928m 195 KAYI 198
                        4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-18105202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-22106203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-21109200No hitNo description
SMARTSM010192.1E-19111202IPR003340B3 DNA binding domain
PROSITE profilePS5086312.985111202IPR003340B3 DNA binding domain
PfamPF023621.3E-14111198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEEQAEPETP LLQTTKIKRK KTAESKMKLT QVSEKPLDPD STPELVRESS FIAPHLLEIF  60
VQGAFDSSKE SKSRRKRAMI DDLYDHAKVN SPVIERAEEV RANLAPSYPS FWKAMVKSNV  120
SHGFWLHLPM RFCKFNMPKI DTVFIVENES GEEYKINYIS QRTALSGGWK AFSDANQLYE  180
GDVLVFHLVE PTRFKAYIVR ANGFGNVNAD AKPLNSVPMD DELEVAPKDH SEKRVKKNKR  240
AKRVKPPPGF HRDNNQSNSL MLLETNNGHV EDQFNNDTED LGPNKVLPHS ESSNFKEMKS  300
IDDFTILVDG LAIDHELSDQ HRSKYYDLCC SQNSFLHDHL LKSINCKLAA EIITQTVNIA  360
EAIRACNLST SRADYEIWDK TLKGFELLGM NVGFLRARLN RLMSLAFESE ESEVSKRLRE  420
VSAEQARAEE EMRSLELKLL RLKETMGRLD SELESLKVKA EKHELKFQEE ANAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13810.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024957938.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A067DV390.0A0A067DV39_CITSI; Uncharacterized protein
STRINGXP_006487085.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-33B3 family protein