PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012030m
Common NameCISIN_1g012030mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 473aa    MW: 54110.3 Da    PI: 5.8199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012030mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-2641120186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+k+e+laL+++r+em+ +++++ lk+plWee s+k+++ g++rs+k+Ckek+en+ k++++++eg+++      +t+++fdql+
  orange1.1g012030m  41 RWPKHETLALLKIRSEMDAAFKDSGLKAPLWEEASRKLSQLGYNRSAKKCKEKFENIYKYHRRTREGRSG------KTYRFFDQLQ 120
                        8*******************************************************************98......4799****98 PP
2trihelix105.34.5e-33303388187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k+ev aLi++r++++ ++ ++  k+plWe++s++m++ g+ rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a
  orange1.1g012030m 303 RWPKDEVEALIRLRSNLDGHYHESGPKGPLWEDISAAMKKLGYDRSAKRCKEKWENMNKYFKKVKESNKKR-PEDAKTCPYFHQLDA 388
                        8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8063498IPR017877Myb-like domain
SMARTSM007170.3938100IPR001005SANT/Myb domain
CDDcd122036.80E-2240105No hitNo description
PfamPF138371.0E-1740122No hitNo description
SMARTSM007178.2E-4300362IPR001005SANT/Myb domain
PROSITE profilePS500907.689302360IPR017877Myb-like domain
SuperFamilySSF466894.48E-5302381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-5302360IPR009057Homeodomain-like
PfamPF138371.0E-23302389No hitNo description
CDDcd122033.74E-24302367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
METSTLPENP GEDTGNRENG GWEEDGRVKG EEGDRNFGGN RWPKHETLAL LKIRSEMDAA  60
FKDSGLKAPL WEEASRKLSQ LGYNRSAKKC KEKFENIYKY HRRTREGRSG KTYRFFDQLQ  120
ALDNSHSFLP ISSPERINSS MAIDVDPISE IKNDIQNQIS SFMDVSTSTT STSSKESDGT  180
QTKKKRKLTE FFERLMREVI EKQENLQKKF IEAIEKCEQE RIAREEAWKM QELARIKRER  240
ELLVQERSIA AAKDAAVLAF LQKFSDQPCP VQLSATPISV EKAVERQENC NGCESFNHIG  300
SSRWPKDEVE ALIRLRSNLD GHYHESGPKG PLWEDISAAM KKLGYDRSAK RCKEKWENMN  360
KYFKKVKESN KKRPEDAKTC PYFHQLDALY KEKTAKKVDN PVNPAYELKP EELLMHMMSA  420
QGQQQEVESL TENGENENAN RSQEGDNEDN EDNEGDDYQL VATNPSSVAI TG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.24790.0callus| flower| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427884.10.0trihelix transcription factor GT-2
RefseqXP_006464545.10.0trihelix transcription factor GT-2-like isoform X1
SwissprotQ391171e-120TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A067ER210.0A0A067ER21_CITSI; Uncharacterized protein
STRINGXP_006464545.10.0(Citrus sinensis)
STRINGXP_006427884.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-118Trihelix family protein