PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012166m
Common NameCISIN_1g011420mg, LOC102617973
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 470aa    MW: 52247.8 Da    PI: 7.5004
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012166mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.2e-08342389448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +l+d++ q+G g W+ I r +     +Rt+ +++++w+++l
  orange1.1g012166m 342 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 389
                        **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-11331396IPR009057Homeodomain-like
PROSITE profilePS5129413.847334393IPR017930Myb domain
SMARTSM007172.5E-8338391IPR001005SANT/Myb domain
CDDcd116609.73E-18340390No hitNo description
SuperFamilySSF466894.49E-16340399IPR009057Homeodomain-like
PfamPF139213.6E-6342396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MVKVEESFVP AFKDKAAEVS NLLAEPKCDH ASVDGVLSFG RENLGKSSGM DGFSYEFEFG  60
FRTNCGGLDS FTTQGEDDLK LEVLDGLLDD IDEVDDFHAA NDLSTVCDDF LLDIEFTEKV  120
AKFDCGPVEG SHLGNSSSES HSPGASGSNV AVGMSDSSIT ALESECKNDS LEKMVNCELH  180
GTFKSKCEYQ APDMEKCPSS HDMDRFDELD SDDNVLLSSI LSKCKKRVKS TVLGTKVKRL  240
RKPTKRYIEE SSDLKPGSLM RGQNVSTATL KDKHPKVTPC NGSSKGSQVA SESWLRGGRL  300
KKRSPILGFE SDDDIFSSDS DDDRVRKRKS KIDDRRKNQR MWTLSEVMKL IDGISQFGVG  360
KWTDIKRLLF SSSSHRTPID LRDKWRNLLR ASYAHQKNKG EVDPKHAMRS LPKPVLCRIR  420
ELATIHPYPR VPYSKKCNGD TDSSRHPIKA KSAPFSSHGR NLRTTIKEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326336KRKSKIDDRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.50300.0callus| seed| stem| vegetative meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481487.10.0uncharacterized protein LOC102617973 isoform X4
TrEMBLA0A067DYX60.0A0A067DYX6_CITSI; Uncharacterized protein
STRINGXP_006481484.10.0(Citrus sinensis)
STRINGXP_006428745.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-23TRF-like 6