PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012246m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 468aa    MW: 51552.3 Da    PI: 9.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012246mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.7e-17223269455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  orange1.1g012246m 223 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 269
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-17212273No hitNo description
SuperFamilySSF474599.95E-21217281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-20223277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-14223269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEVDKHTRQL REEKMVKFDP PGAVTSSQHP NVNHSVVPEL QRNAMPPPRF EVHDAAPQNK  60
NLGDLGKLVN FSQSTAPPKG ELGPCSGQFD RKRSGNLTQG EVRECSMMTV GSSHCGSNQV  120
AYDLDMSRAS SSGLNDDVRK VISPSERGKT ETIEPTVTSS SGGSGSSFNR TSKQSTGDNS  180
LKRKSRDAVD SECQSEAAGF ESGAGNKTAQ RSGSCRRSRA AEVHNLSERR RRDRINEKMR  240
ALQELIPHCN KTDKASMLDE AIEYLKSLQL QLQVMWMGSG MAPLMFPGMQ HYMSRMGMGM  300
GPPPLPSVTN PMHFSRVPLV DQSMSMAQAQ NRAVMCQASV LNPVNYQNQM QNSNFTEQYA  360
RYMGFHPMQA NSQPMNMFRF GSPTMQNQIV SLPSSSCVPF SGGAATDNSP LSGKMVGERR  420
RLIKWLWSPI FIMGRSQEGE SCSSWRIFGP FLSCIAYDIN ALSIAWL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227232ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387762.20.0transcription factor PIF4-like isoform X2
TrEMBLV4TKJ10.0V4TKJ1_9ROSI; Uncharacterized protein
STRINGXP_006485007.10.0(Citrus sinensis)
STRINGXP_006437070.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.11e-53phytochrome interacting factor 3-like 6