PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012348m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 466aa    MW: 51854.3 Da    PI: 8.234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012348mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14359440179
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+
  orange1.1g012348m 359 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDI 440
                        89**************************555566778***************9989999999***9.***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359032115IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.102.8E-24355440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-15356440IPR015300DNA-binding pseudobarrel domain
CDDcd100177.11E-18357440No hitNo description
SMARTSM010199.6E-9359448IPR003340B3 DNA binding domain
PfamPF023626.5E-12359440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV  60
YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV  120
LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR  180
LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD  240
MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF  300
HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE  360
KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM  420
YVLEGVTPCI QNMQLQAGDI GNQPKSQESY EMFSFMWKVH VHALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-543374391103B3 domain-containing transcription repressor VAL1
5yzz_C2e-543374391103B3 domain-containing transcription repressor VAL1
5z00_C2e-543374391103B3 domain-containing transcription repressor VAL1
5z00_G2e-543374391103B3 domain-containing transcription repressor VAL1
5z00_K2e-543374391103B3 domain-containing transcription repressor VAL1
5z00_M2e-543374391103B3 domain-containing transcription repressor VAL1
6j9a_A1e-543374392104B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-67KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-109Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GK190.0A0A067GK19_CITSI; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.16e-91VP1/ABI3-like 3