PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013094m
Common NameCISIN_1g011640mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 450aa    MW: 49248.7 Da    PI: 7.3013
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013094mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.33.9e-42155231278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        CqvegC  dls+ak+yhr+h+vCe hsk+p+v+v gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  orange1.1g013094m 155 CQVEGCGLDLSSAKDYHRKHRVCENHSKSPKVIVGGLERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKSQP 231
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34148216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.573152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-39153234IPR004333Transcription factor, SBP-box
PfamPF031106.0E-32155228IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSSMMEWNGK TPLQWDWENL IMFNATAAEN PRKTRQIEWE IDGDGGIDST SFFSSGGGDG  60
SGGSISDMGL ASLSKSSKSA SNNSSSMGET KTSKFRLEAS DDVLEDFDLK KEFAKAEPTG  120
GSPTLEASVG SVCGSYSTSA KRSRSNPQTT QAALCQVEGC GLDLSSAKDY HRKHRVCENH  180
SKSPKVIVGG LERRFCQQCS RFHGLSEFDE KKRSCRRRLS DHNARRRKSQ PEAVRLNPAR  240
LSSSLYDGKQ QMTLVWNSVP FVHKNPTETF TWEGTCVSKS TQTKGYASKS AKGEGTDVLL  300
QLHGNQPPNS VPARRDDSNG LLLSKAKVTM AEVLDQGPEE SMISFDLGAT QDCHSALSLL  360
SKTSWGICEP KKVSQQHPTS TSLTNIPHAV MPAMAQGSPF ASSEYRQMGK LSTEFQVHAS  420
SFHQDEGNYS QEIQLFRAPY ESDFYPTVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-281542281084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210227KKRSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.118070.0flower| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484119.10.0squamosa promoter-binding-like protein 2 isoform X2
RefseqXP_006484120.10.0squamosa promoter-binding-like protein 2 isoform X2
RefseqXP_024042536.10.0squamosa promoter-binding-like protein 2 isoform X2
TrEMBLA0A067H2E10.0A0A067H2E1_CITSI; Uncharacterized protein
STRINGXP_006484112.10.0(Citrus sinensis)
STRINGXP_006438013.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-68squamosa promoter binding protein-like 2