PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013250m
Common NameCISIN_1g013250mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 448aa    MW: 51086.9 Da    PI: 6.251
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013250mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.56.3e-22124220185
           trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                        +Wt++ v++Li+a+  ++++   +            +kk++W+ vsk m +rg+++sp+qC++k+++lnkrykk++++ +k+ t++++++ +
  orange1.1g013250m 124 KWTDNVVRLLIAAVACVGDDGTIDGveglkrksgilQKKGKWKTVSKIMISRGCQVSPQQCEDKFNDLNKRYKKLNDILGKGlTCQVVENPA 215
                        7**************888888865444556667888**********************************************99****9999 PP

           trihelix  81 yfdql 85 
                        + d +
  orange1.1g013250m 216 LIDTM 220
                        88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17122212No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDNSSGLGGR FLSGQNVGLL DLESSIPRNQ QNQLGHPSFS RPHQMNMMHG LENDHHHIGL  60
LEVKGSSRKG LPMNFGRGKM VSPINASNNG NTSEEDEPSY TDEGNGENSN GGRDKKGSMW  120
HRMKWTDNVV RLLIAAVACV GDDGTIDGVE GLKRKSGILQ KKGKWKTVSK IMISRGCQVS  180
PQQCEDKFND LNKRYKKLND ILGKGLTCQV VENPALIDTM SCSHLSAKAK DDVRKILGSK  240
HLFYKEMFAY HNGKKIPNCH DIDLQGNDES EEEEADRNND TDDDESDNED DRNDDEDEGR  300
MAEIGERGKG NEEDGHSWPQ SAGRSVFEME MARIFQDPSK SMWERREWIK KQKLALQNQR  360
VSIQAQAFEL EKQHLKWLRY CSKKDRELER SRLENERIRL DNEQMILHLK QKQFELDLRK  420
TEVSLEPTSL GNRDRDRDQI DDLGRHQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470589.10.0uncharacterized protein LOC102621074 isoform X1
TrEMBLA0A067FDL80.0A0A067FDL8_CITSI; Uncharacterized protein
STRINGXP_006470589.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167391012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-64sequence-specific DNA binding transcription factors