PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013304m
Common NameCISIN_1g012054mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 447aa    MW: 49453 Da    PI: 10.3508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013304mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08857346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46
                        W t+E++ll  av ++G+++W+++a+++        + t+++ck ++ +
  orange1.1g013304m  8 VWGTWEELLLGGAVLRHGTRDWNLVAAELRartvcpYTVTPEMCKAHYED 57
                       6*****************************99999988899999999966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.8E-7858IPR001005SANT/Myb domain
CDDcd001673.83E-4955No hitNo description
SuperFamilySSF473702.62E-17233345IPR001487Bromodomain
SMARTSM002978.3E-14240344IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.6E-14243347IPR001487Bromodomain
PfamPF004394.3E-10250328IPR001487Bromodomain
PROSITE profilePS5001410.084255325IPR001487Bromodomain
CDDcd043691.75E-13257339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGAEVIEVWG TWEELLLGGA VLRHGTRDWN LVAAELRART VCPYTVTPEM CKAHYEDLQQ  60
RFYGCKSLES KLETLKAERG DDCQVDNDCS QTESPVPCQK SDAVVCSSKE TSKDGLSAGS  120
FTRETRTHWS PVSQIPAAVA AEEMETKTQG LLSSEQEKVS SSEKITAIVC GGQVGSLKKR  180
RGKRKRKDCS RDVKEGSVGE SDFLGVPDAK PVYRRKENST PVSGQFARSS GADDQSGSLR  240
KDSIDDIKGV FESVAQNESA FVFRHRLDSQ KRGRYKKMIL RHMDVDTIRS KISSHSIMSI  300
KELFRDLLLL ANNAVVFYSK NTREHKSAFL LRTIVLKTMR QYFKDNEYGN KPTTSFLSPS  360
SPLHKPPVKP RTARPGRSKL SLKAANAGNP ADKPLSRAKK PSNVDSPSSM ESLTLTKKSL  420
SRKVGRTNAS QRAESATRGR KRSRAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183LKKRRGKR
2177182KKRRGK
3179187RRGKRKRKD
4438444GRKRSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467867.10.0uncharacterized protein LOC102619838 isoform X4
TrEMBLA0A067GB040.0A0A067GB04_CITSI; Uncharacterized protein
STRINGXP_006467864.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.13e-13DNA-binding bromodomain-containing protein