PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013481m
Common NameCISIN_1g013225mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 443aa    MW: 47570.9 Da    PI: 7.0338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013481mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20209258255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  orange1.1g013481m 209 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 258
                        7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712209266IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22209267IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-33209267IPR001471AP2/ERF domain
SMARTSM003803.3E-37209272IPR001471AP2/ERF domain
PfamPF008473.9E-14209258IPR001471AP2/ERF domain
PRINTSPR003671.3E-11210221IPR001471AP2/ERF domain
CDDcd000181.23E-14217268No hitNo description
PRINTSPR003671.3E-11232248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MCILNKVANQ RGSVEGSSFP TGSGGEAQDQ QDDQSYGQEN IIESQSGHFQ RATSNQITES  60
PSTAAASLMG YDHAREMSAM VSALTRVVSG QRAATDVGYS ATGFGLASAS ASASVSASPA  120
SASGLWIGHK RGREEAEAAQ LAPRLYRGFG DFRDSSSSSS AEEPTSSIAA PATTATTTTT  180
ATIPTTPSSE SSSSGVSYEE TSGGERRRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD  240
TAEAAARAYD EAALRFRGNR AKLNFPENVR IVPPLQPQPQ PQPQPQQHQQ VLQNIPTRQT  300
PNFATVATNF HQQQQQRQLQ TATMPPFFMS QGYQDYFDYS QLLQNQPTSL LEQMLQPQTQ  360
THQIASMQPP LLSSSLSSYS FGPSSSSASS VSSSSASFPL LFGDQQLGFF RPPQNQSQSS  420
GSDFPASPPP WSHSGHYPPS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22208269163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952711.10.0ethylene-responsive transcription factor ABR1 isoform X2
TrEMBLA0A067GVN50.0A0A067GVN5_CITSI; Uncharacterized protein
STRINGXP_006473085.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-13ethylene response factor 110