PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013565m
Common NameCISIN_1g013565mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 441aa    MW: 49198.3 Da    PI: 7.5694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013565mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.31.3e-321362411100
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  orange1.1g013565m 136 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGvGD 227
                        89****************************66677899*************************************************66699 PP

                        .SEE..EEEEE-SS CS
                 B3  88 .sefelvvkvfrks 100
                          +++l++ ++r+s
  orange1.1g013565m 228 lAKGRLFIDWRRRS 241
                        9**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-41131244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30133224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.31E-27134223No hitNo description
SMARTSM010191.3E-23136241IPR003340B3 DNA binding domain
PROSITE profilePS5086314.847136241IPR003340B3 DNA binding domain
PfamPF023625.0E-30136241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MIGIDYEMGN IISNTGSNQA VKLHFSTTYA SNSSSSPSSA SSHHHHYTTQ TQQLLPLTTH  60
HQNYNKQQQP QMGSWLLGKT TTTTTAAELE DVSNEEETAA PTKEQAIIMQ ETKDIIEEGE  120
AEEDRVLISL EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK YFPLDSSSNE KGLLLNFEDR  180
NGKPWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDVVS FHRGVGDLAK GRLFIDWRRR  240
SHPPAAAAAS FSRHLPFYRS IPWNPLLMMR PPVLPASMYS QSQINNNFYN RNSISLGGTG  300
NNNNVLSTRT LGSILYLRSQ LPAAPATQQP PPPPPPPHTE IGMTKWQQHP IVFDSVPVVQ  360
GKATAKRLRL FGVNMDCPIT ESDDECHILS SSTSIQHATM AIHDQPSQLS SSSQLSLYDA  420
TPLLPPFDFL NKGKASMSFD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-651312403113B3 domain-containing transcription factor NGA1
5os9_B2e-651312403113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476252.10.0B3 domain-containing protein Os03g0120900-like
RefseqXP_006476253.10.0B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-76Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A067GB150.0A0A067GB15_CITSI; Uncharacterized protein
STRINGXP_006476252.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-66B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]