PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014138m
Common NameCISIN_1g011623mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 431aa    MW: 48839.6 Da    PI: 4.265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014138mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07270318247
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                        ++WT+eE+ ++ ++v  ++       W+  +  ++  Rt ++++s+++++
  orange1.1g014138m 270 KNWTKEEENKFHEVVSSYPVSmgknFWDHLSLVFP-SRTKNELVSYYFNV 318
                        68***************98878888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3E-6268321IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-5269327IPR009057Homeodomain-like
SuperFamilySSF466896.65E-6269319IPR009057Homeodomain-like
PfamPF002494.2E-6270318IPR001005SANT/Myb domain
PROSITE profilePS500906.4271319IPR017877Myb-like domain
CDDcd001671.57E-8271319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIHKRPFLDE DCFEFPCKHP KQWECTNYLA PMVHMSPPAD GHQKPQTSDG DGEQNINRCR  60
DQGRFLFGPV AEVSNGTEKE FEIGSDCISP LFWANGLFAE GDANSEEVYL SLFPEYFATE  120
HQIRTFLQSD EIYSSHLDHP PVKSVSIGPE YQADVPEWCL QGSKNSLAHL DGSDHQVRLE  180
RLSGSCLVVD DVQGEKLLGT CVVSMPDSAP SANYYSQSLV TRNDCECLDK GSIRCVRQHV  240
MEAREKLRVN LGHKIFEELG FHEMGEEVSK NWTKEEENKF HEVVSSYPVS MGKNFWDHLS  300
LVFPSRTKNE LVSYYFNVFI LQKRAEQNRF DPLNIDSDDD EWQRCDLGAA EEDEESGVEF  360
LSNRGVSAYQ QDDHVENCQD DTEGGYLIDD CKNDANVVHT VATDEEEDGD VDDIPEPHVR  420
DLFSHSSTDT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.119710.0seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482728.10.0uncharacterized protein LOC102626117
TrEMBLA0A2H5PKC00.0A0A2H5PKC0_CITUN; Uncharacterized protein
STRINGXP_006482728.10.0(Citrus sinensis)