PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014204m
Common NameCISIN_1g014204mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 430aa    MW: 47489.3 Da    PI: 8.3601
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014204mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.2e-15107166155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  orange1.1g014204m 107 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 166
                        78*******************655454478446**********99*************98 PP
2AP248.62e-15209260155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  orange1.1g014204m 209 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 260
                        78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-11107166IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-16107176IPR016177DNA-binding domain
CDDcd000181.51E-20107176No hitNo description
Gene3DG3DSA:3.30.730.102.0E-15108175IPR001471AP2/ERF domain
SMARTSM003801.3E-27108180IPR001471AP2/ERF domain
PROSITE profilePS5103218.769108174IPR001471AP2/ERF domain
PRINTSPR003677.9E-7109120IPR001471AP2/ERF domain
PfamPF008473.9E-10209260IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-18209270IPR016177DNA-binding domain
CDDcd000181.83E-24209270No hitNo description
Gene3DG3DSA:3.30.730.109.0E-19210268IPR001471AP2/ERF domain
SMARTSM003803.6E-34210274IPR001471AP2/ERF domain
PROSITE profilePS5103219.006210268IPR001471AP2/ERF domain
PRINTSPR003677.9E-7250270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MYHHHFLHQH QHSWLRQTPF ASSSSSAEKS AAASDTNQGN NCGFQPLSLA MNPTSAEQNG  60
PIITTAITPL QVQGVAADNR KRPMGKATAA KEPVPRKSID SFGQRTSQYR GVTRHRWTGR  120
YEAHLWDNSC RKEGQTRKGR QVYLGGYDKE DKAARAYDLA ALKYWGATTH INFPLSTYEK  180
ELEEMKHMTR QEFVANLRRK SSGFSRGASV YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  240
FSTQEEAAEA YDIAAIKFRG TSAVTNFDIS RYDVKRICSS STLIASDLAK RSPKDSAPLV  300
LEDYNSCASS TSPQPLAISN GEASDELVDM VWSANSDDHQ HQNTNTNNET SLGASGSRNS  360
SNPESPKCPV GLTSEFGMSG AEYNEGYFSS PGTKYENCDD DNGGNHSTNN RLVNLGLVHH  420
VPMFALWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.51280.0callus| flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387488.20.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-133AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A067FCA50.0A0A067FCA5_CITSI; Uncharacterized protein
STRINGXP_006426649.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-129AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]