PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014215m
Common NameCISIN_1g014215mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 429aa    MW: 48007.6 Da    PI: 7.053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014215mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-096890426
                       ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                       e C+f++rtG+Ck+G  CkF+H+
  orange1.1g014215m 68 EDCPFYLRTGYCKFGFCCKFNHP 90
                       89********************9 PP
2zf-CCCH261.6e-08116136626
                        -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                        C+f++ tG Ck+G+ C+F H+
  orange1.1g014215m 116 CKFYQSTGGCKHGEACRFKHS 136
                        ********************8 PP
3zf-CCCH24.74.2e-08172192626
                        -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                        C+f++rt  Ck+G+ C+F+H+
  orange1.1g014215m 172 CKFYQRTEGCKHGEACRFSHS 192
                        ********************8 PP
4zf-CCCH22.81.6e-07225246627
                        -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                        C++++  G CkyG++CkF+H++
  orange1.1g014215m 225 CKYHLSAGGCKYGNSCKFSHSK 246
                        ********************95 PP
5zf-CCCH352.4e-11276297526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+f++r+G C yG  C+F+H+
  orange1.1g014215m 276 ECPFYMRNGSCAYGVDCRFNHP 297
                        7********************9 PP
6zf-CCCH38.12.6e-12391417127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++lC++f++tG Cky + CkF+H++
  orange1.1g014215m 391 PGEPLCDYFMKTGNCKYRSACKFHHPK 417
                        589**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.386491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5966492IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-66890IPR000571Zinc finger, CCCH-type
SMARTSM003560.075110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.713111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5114139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5116138IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6116136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648166194IPR000571Zinc finger, CCCH-type
SMARTSM003560.26166193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5170195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4172194IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5172192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.479219247IPR000571Zinc finger, CCCH-type
SMARTSM003560.1219246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5224248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5225247IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5225246IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732271299IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4271298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5273298IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-9276297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4277296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511390418IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6390417IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8392417IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5394418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5395416IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVDDDGWEDN AAGTWAEESC WSQKREQEEE LSKEFEKNVA LTEESYNPDG NGDSQGTKHE  60
YPSRPFAEDC PFYLRTGYCK FGFCCKFNHP VRGDFQGLKE NERGGFVGQH LGQIQCKFYQ  120
STGGCKHGEA CRFKHSIEKS EVSKSVLNAF NLPIKLESKG EGLMEKTVQI QCKFYQRTEG  180
CKHGEACRFS HSTEKSENPL PFSGANGMKE SKGGSLVEMT GLIGCKYHLS AGGCKYGNSC  240
KFSHSKEKPQ TYIKKSEKAS PELNFLGLPI RVHEIECPFY MRNGSCAYGV DCRFNHPDPV  300
ADEGSDPFNE ASDPASRSWS PDIISRKTVP NLDNHSFHPH WMLKSKFNSL QGSVYPQAKA  360
ELPLSSPALG NLTKTADTST YHQFNEFPER PGEPLCDYFM KTGNCKYRSA CKFHHPKNGD  420
GKSPVCTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447207.20.0zinc finger CCCH domain-containing protein 43
RefseqXP_006469940.10.0zinc finger CCCH domain-containing protein 43-like
RefseqXP_024045834.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_024045835.10.0zinc finger CCCH domain-containing protein 43
TrEMBLA0A067DSB20.0A0A067DSB2_CITSI; Uncharacterized protein
STRINGXP_006469940.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.25e-52C3H family protein