PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014780m
Common NameCISIN_1g011420mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 420aa    MW: 47013.9 Da    PI: 7.9007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014780mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-08292339448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +l+d++ q+G g W+ I r +     +Rt+ +++++w+++l
  orange1.1g014780m 292 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 339
                        **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-12281346IPR009057Homeodomain-like
PROSITE profilePS5129413.847284343IPR017930Myb domain
SMARTSM007172.5E-8288341IPR001005SANT/Myb domain
CDDcd116601.13E-17290340No hitNo description
SuperFamilySSF466893.66E-16290349IPR009057Homeodomain-like
PfamPF139213.1E-6292346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDGFSYEFEF GFRTNCGLDS FTTQGEDDLK LEVLDGLLDD IDEVDDFHAA NDLSTVCDDF  60
LLDIEFTEKV AKFDCGPVEG SHLGNSSSES HSPGASGSNV AVGMSDSSIT ALESECKNDS  120
LEKMVNCELH GTFKSKCEYQ APDMEKCPSS HDMDRFDELD SDDNVLLSSI LSKCKKRVKS  180
TVLGTKVKRL RKPTKRYIEE SSDLKPGSLM RGQNVSTATL KDKHPKVTPC NGSSKGSQVA  240
SESWLRGGRL KKRSPILGFE SDDDIFSSDS DDDRVRKRKS KIDDRRKNQR MWTLSEVMKL  300
IDGISQFGVG KWTDIKRLLF SSSSHRTPID LRDKWRNLLR ASYAHQKNKG EVDPKHAMRS  360
LPKPVLCRIR ELATIHPYPR VPYSKKCNGD TDSSRHPIKA KSAPFSSHGR NLRTTIKEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276286KRKSKIDDRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.50300.0callus| seed| stem| vegetative meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428745.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006428746.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006481484.10.0uncharacterized protein LOC102617973 isoform X2
RefseqXP_006481485.10.0uncharacterized protein LOC102617973 isoform X2
TrEMBLA0A067DYJ00.0A0A067DYJ0_CITSI; Uncharacterized protein
STRINGXP_006481484.10.0(Citrus sinensis)
STRINGXP_006428745.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-23TRF-like 6