PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g014868m

Common Name

CISIN_1g009918mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRF

Protein Properties

Length: 418aa MW: 45220.1 Da PI: 7.312

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g014868m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.3e-24	68	110	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErHlhrgr rsrk++e orange1.1g014868m 68 LEPGRCRRTDGKKWRCSRDVAPDQKYCERHLHRGRPRSRKPVE 110 69**************************************987 PP
2	QLQ	54.3	4.2e-19	8	41	2	35
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+l+yK+++a++PvP++Ll++ orange1.1g014868m 8 PFTNAQWTELERQALIYKCMVASVPVPSDLLFPF 41 8******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.4E-11	7	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.368	8	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-12	8	40	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	67	111	IPR014977	WRC domain
Pfam	PF08879	9.2E-21	69	110	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MAARMGFPFT NAQWTELERQ ALIYKCMVAS VPVPSDLLFP FTRNRNSAAA AAAPVGLDLI 60 RLSKGGDLEP GRCRRTDGKK WRCSRDVAPD QKYCERHLHR GRPRSRKPVE LQPPPNSKKK 120 TRLQSHPLNT TNTVNNSNNN NLDFSASQFV RNFTQYPHPH VREQRCLDKD WMMRGEAVHL 180 PSNAAGTEWN HLINNPASPV NINQHYHLEE PLNLNSFASF SAGEAQQSND CPFYTDPDLV 240 PRVFIDAWSN ANGVSNGDDQ IHNTNSGTKS SVSSSGNLSL SPLSLSMGGN STIDEEMGQL 300 QMGLGLVESS QDHKCDTNPQ LSSWLNPDSW APGGPLAEVL RPSTVPASAS GPPSPAAGNG 360 DSDSPPATTV SSPSGVLQKA LVSWSDSSGN SSPTPGSSRT NKSEIALLWF GQGKLES*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MAARMGFPFT NAQWTELERQ ALIYKCMVAS VPVPSDLLFP FTRNRNSAAA AAAPVGLDLI  60
RLSKGGDLEP GRCRRTDGKK WRCSRDVAPD QKYCERHLHR GRPRSRKPVE LQPPPNSKKK  120
TRLQSHPLNT TNTVNNSNNN NLDFSASQFV RNFTQYPHPH VREQRCLDKD WMMRGEAVHL  180
PSNAAGTEWN HLINNPASPV NINQHYHLEE PLNLNSFASF SAGEAQQSND CPFYTDPDLV  240
PRVFIDAWSN ANGVSNGDDQ IHNTNSGTKS SVSSSGNLSL SPLSLSMGGN STIDEEMGQL  300
QMGLGLVESS QDHKCDTNPQ LSSWLNPDSW APGGPLAEVL RPSTVPASAS GPPSPAAGNG  360
DSDSPPATTV SSPSGVLQKA LVSWSDSSGN SSPTPGSSRT NKSEIALLWF GQGKLES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441217.1	0.0	growth-regulating factor 2 isoform X2
TrEMBL	A0A067EC98	0.0	A0A067EC98_CITSI; Uncharacterized protein
TrEMBL	A0A067ECM3	0.0	A0A067ECM3_CITSI; Uncharacterized protein
STRING	XP_006441218.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-35	growth-regulating factor 7

Link Out ? help Back to Top
Phytozome	orange1.1g014868m