PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014885m
Common NameCISIN_1g011928mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 417aa    MW: 47740.3 Da    PI: 6.7089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014885mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-1652139196
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f k++++s+v+   +l lp +f++ ++   + ++  ++e+esg+++++++     s+r+ l++GWk F +an+L egD++vF+l++ ++f  
  orange1.1g014885m  52 FWKAMVKSNVSHGFWLHLPMRFCKFNMP--KIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF-- 135
                        6799*******************88863..477899**************....566778***********************9876666.. PP

                        EEEE CS
                 B3  93 vvkv 96 
                        +  +
  orange1.1g014885m 136 KAYI 139
                        4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-2246144IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1846143IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-2150141No hitNo description
PROSITE profilePS5086312.98552143IPR003340B3 DNA binding domain
SMARTSM010192.1E-1952143IPR003340B3 DNA binding domain
PfamPF023621.1E-1452139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MFVILIPLKY TISSRRKRAM IDDLYDHAKV NSPVIERAEE VRANLAPSYP SFWKAMVKSN  60
VSHGFWLHLP MRFCKFNMPK IDTVFIVENE SGEEYKINYI SQRTALSGGW KAFSDANQLY  120
EGDVLVFHLV EPTRFKAYIV RANGFGNVNA DAKPLNSVPM DDELEVAPKD HSEKRVKKNK  180
RAKRVKPPPG FHRDNNQSNS LMLLETNNGH VEDQFNNDTE DLGPNKVLPH SESSNFKEMK  240
SIDDFTILVD GLAIDHELSD QHRSKYYDLC CSQNSFLHDH LLKSINCKLA AEIITQTVNI  300
AEAIRACNLS TSRADYEIWD KTLKGFELLG MNVGFLRARL NRLMSLAFES EESEVSKRLR  360
EVSAEQARAE EEMRSLELKL LRLKETMGRL DSELESLKVK AEKHELKFQE EANAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13810.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487086.10.0B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A067DTW30.0A0A067DTW3_CITSI; Uncharacterized protein
STRINGXP_006487085.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-33B3 family protein