PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015643m
Common NameCISIN_1g015643mg, LOC102625646
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 404aa    MW: 44664.2 Da    PI: 6.0993
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015643mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-081760340
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       +r C+ + +k+++++C  ++ +lC+ C  + H+       H++v
  orange1.1g015643m 17 ARACDGCLRKRARWYCVADDAFLCQGCDASVHSAnqlasrHERV 60
                       578*****************************667888888876 PP
2CCT68.32.1e-23347390144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  orange1.1g015643m 347 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 390
                        9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5371562IPR000315B-box-type zinc finger
SMARTSM003364.5E-111562IPR000315B-box-type zinc finger
PfamPF006436.3E-71760IPR000315B-box-type zinc finger
CDDcd000214.14E-81862No hitNo description
PfamPF062035.3E-18347389IPR010402CCT domain
PROSITE profilePS5101716.083347389IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMTGEKRTAN AMGGKTARAC DGCLRKRARW YCVADDAFLC QGCDASVHSA NQLASRHERV  60
RLETASSCNN NNKLINEHTD KDTVPVWHQG FTRKARTPRH NNNKAMLMQQ AKANEPLVPE  120
IGCEDGSLQA DDQVIDEQLL YQVPVFDPFE AVEPDENLIV DGYNGQDGTG DLDDLHGFLP  180
SDLDLAEFAA DVESLLGGGG GALDEDSCDV KEFWTLLDCK EEETIALNLK IKDEEVEEAV  240
IAEATREAIG CNFDYQSPVT GDDTAGLMST ECKPKLMRNV SLKLNYDAVI TAWASQGCPW  300
TAGSRPEINL NHCWPYCTGL CCKGVHHHTC GGGAVLRGCH LGAGGGREAR VSRYREKRRT  360
RLFSKKIRYE VRKLNAEKRP RMKGRFVKRT SFMGSANDAL QYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357373RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485786.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A067EU730.0A0A067EU73_CITSI; Uncharacterized protein
STRINGXP_006485786.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-90B-box type zinc finger protein with CCT domain