PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015670m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 404aa    MW: 42133.4 Da    PI: 8.9328
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015670mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.7e-131741327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C++++rtGtCkyG++Ck++H++
  orange1.1g015670m 17 QPVCQYYMRTGTCKYGASCKYHHPR 41
                       689********************96 PP
2zf-CCCH36.95.9e-126287227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       ++++C+++++t +Ck+G++CkF+H++
  orange1.1g015670m 62 GEKECSYYMKTRQCKFGATCKFHHPQ 87
                       7899********************97 PP
3zf-CCCH38.51.9e-12230255227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++ +C+++++tG Ck+G++C+F+H++
  orange1.1g015670m 230 GQQECQYYMKTGDCKFGSSCRFHHPR 255
                        6789********************96 PP
4zf-CCCH30.46.7e-10277301327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++C ++ + G Ck+G+ CkF H++
  orange1.1g015670m 277 AAPCTHYVQRGVCKFGPACKFDHPM 301
                        589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.9011442IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-71441IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-101741IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-71742IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-61941IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9396088IPR000571Zinc finger, CCCH-type
SMARTSM003560.00186087IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-56288IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-96287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.92228256IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6228255IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9230255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6231256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-6234256IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202274302IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7277301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5277302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4279299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MGAARAGGGE FPERVGQPVC QYYMRTGTCK YGASCKYHHP RQGAGSVSNV SLNYYGYPLR  60
PGEKECSYYM KTRQCKFGAT CKFHHPQPAG VPAPTPSPAP QVAAVPTPVP APALYPPLQS  120
PSVPSAQQYG VVVARPPLLH GSYVQGPYGP VLVSPSMFSL QGWSPYATSL NPISSPGTGT  180
QSSVGSSSIY GITQLSASAP AYTGTYQSLP SSVGPSSSSQ KEHPFPERPG QQECQYYMKT  240
GDCKFGSSCR FHHPRELIVP KMDVTLSPFG LPLRPGAAPC THYVQRGVCK FGPACKFDHP  300
MGMLSYSPSA SSLADMPVAP YPVGSSIGTL APSSASSDLR PELISGSSKD SVSTRMSSSV  360
SISSGSVGSI LSKSGPVPHS SMQQSGQSSG PSTADDSSAE ART*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389033.10.0zinc finger CCCH domain-containing protein 58 isoform X2
RefseqXP_024033694.10.0zinc finger CCCH domain-containing protein 58 isoform X2
SwissprotQ6NPN31e-135C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLV4S2D80.0V4S2D8_9ROSI; Uncharacterized protein
STRINGXP_006489144.10.0(Citrus sinensis)
STRINGXP_006419655.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-110C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]