PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016134m
Common NameCISIN_1g016134mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 395aa    MW: 43122.9 Da    PI: 7.4279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016134mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06137157526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C++++  G C +Gd C+F H+
  orange1.1g016134m 137 VCCHWLL-GNCVRGDECRFLHS 157
                        6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.3293460IPR000571Zinc finger, CCCH-type
SMARTSM003560.00353559IPR000571Zinc finger, CCCH-type
SuperFamilySSF509782.22E-3586103IPR017986WD40-repeat-containing domain
PROSITE profilePS5010311.742132159IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.45E-5134157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4137157IPR000571Zinc finger, CCCH-type
SMARTSM003202163200IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.9E-31163389IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.22E-35164389IPR017986WD40-repeat-containing domain
SMARTSM003200.001224261IPR001680WD40 repeat
PROSITE profilePS5029414.898231394IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.447231270IPR001680WD40 repeat
PfamPF004000.0011232260IPR001680WD40 repeat
PROSITE patternPS006780248262IPR019775WD40 repeat, conserved site
SMARTSM003200.019264301IPR001680WD40 repeat
PfamPF004000.21267300IPR001680WD40 repeat
SMARTSM0032072305348IPR001680WD40 repeat
SMARTSM00320100351388IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDVKASKRFT DQRERSFFNP INGQAGGGVG GGWPTNKVVC VYVLEGRCNR NPCRFAHTES  60
SSLLLSNPKL AKKSPPSYNR LKNNLWVSSG SEDRIPHVRN RENPGYTGPK NSSSASSTVS  120
DESGDKSTSK KTTLKNVCCH WLLGNCVRGD ECRFLHSWFC GEGLTMLAKL EGHEKAVSGI  180
ALPLRSDKLF SGSRDGTAWN IESSAEFSLD GPVGEVYSMV VANEMLFAGA QDGHTRPVTC  240
LAVGRSRLCS GSMDNTIRVW ELDTLEPVMT LNDHTDAPMS LLCWDQFLLS CSLDHTIKVW  300
FATGRGNLEA AYTHKEDNGV LALGGLNDPD GKPVLICACN DNTVHLYELP SFMERGRIFS  360
KHEVRVIEIG PDKLFFTGDG AGMLGVWKLL AKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6o_A2e-141463898322Ika8
6g6o_B2e-141463898322Ika8
6g6o_C2e-141463898322Ika8
6g6p_A2e-141463898322Ika8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045454.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ11e-107C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A067E5U70.0A0A067E5U7_CITSI; Uncharacterized protein
STRINGXP_006478717.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-110C3H family protein