PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016203m
Common NameCISIN_1g016046mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 394aa    MW: 44228.7 Da    PI: 7.732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016203mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14341391148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        +++W+ eE++ l ++v+q+G+g+Wk+I +  +     Rt+ ++k++w++++
  orange1.1g016203m 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPgafDERTEVDLKDKWRNVM 391
                        689********************************99***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.945336393IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-14337392IPR009057Homeodomain-like
SuperFamilySSF466892.02E-15338392IPR009057Homeodomain-like
SMARTSM007171.2E-10340393IPR001005SANT/Myb domain
PfamPF002492.6E-11341390IPR001005SANT/Myb domain
CDDcd116601.04E-17344392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDEDISRWVI EFLLRNSPSD QLINRILAII PISNNNNFRL KKTLLLRSIQ SQLSSDGDAS  60
LSKTILENLK AVRDLDEKEG IAITRSMEAA IRDAAENTQN DDALRQVVKT YLEEAWASMG  120
PTFLELAAAG GRGRAHVETE DKEKGKGIRK ENVQPKRKHV ASHRRARGPV RIIDSEDLSS  180
DEPCSQYDTL PTPEVNKVQE ALKSSSLELQ AIVTDPLPDA LRQAEAVVSG MARANQIPEP  240
SVGRETNVDK PVLNPSVDAH LEPLQANQGN RKDESCSHQS NVPKSSLMER NSTAHAYEWD  300
DSIDEEPSNQ GNRFHLPSPK RKAVSPLKNH DVTKLARRRK KKKWSLEEED ALRKGVEQFG  360
KGNWKLILKS NPGAFDERTE VDLKDKWRNV MRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319341KRKAVSPLKNHDVTKLARRRKKK
2336342RRRKKKK
3337342RRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.48380.0flower| fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422498.10.0uncharacterized protein LOC18035267
TrEMBLA0A067FYH90.0A0A067FYH9_CITSI; Uncharacterized protein
STRINGXP_006422498.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-17MYB_related family protein