PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016650m
Common NameCISIN_1g010454mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 386aa    MW: 42176.1 Da    PI: 6.4145
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016650mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17171220155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g016650m 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 220
                        78*******************......55************************997 PP
2AP241.63e-13263313155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  orange1.1g016650m 263 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 313
                        89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16171229IPR016177DNA-binding domain
PfamPF008474.0E-9171220IPR001471AP2/ERF domain
SMARTSM003804.5E-31172234IPR001471AP2/ERF domain
PROSITE profilePS5103217.794172228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-17172228IPR001471AP2/ERF domain
CDDcd000183.33E-11172227No hitNo description
CDDcd000187.10E-26263323No hitNo description
PfamPF008479.2E-9263313IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-17263322IPR016177DNA-binding domain
PROSITE profilePS5103215.527264321IPR001471AP2/ERF domain
SMARTSM003802.5E-32264327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-16264321IPR001471AP2/ERF domain
PRINTSPR003673.5E-6265276IPR001471AP2/ERF domain
PRINTSPR003673.5E-6303323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLDLNLNVMS IESTQQNSDE ERVGSVVLVE KSPEGSSGTS NSSVVNADAS SNVGDDESCS  60
TRAVAGDNSV FTFNFDILKV GGDSGNVRNE NVEQNNAASR KEFAFFPASG GGENGGGQSS  120
GSWIDLSFDK QQQQYQNQQP QQQEGGGEVR VTQQSSPVVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNLA DYEDDMKQMK  240
NLTKEEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA  300
ARAYDKAAIK CNGREAVTNF EPSTYEGEMI TEGSNEGGDH NLDLNLGISS SFGSGPKANE  360
GHSQFLSGPY GAHGGRTSRV TFELK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.171260.0callus| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488203.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-109RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A067GC330.0A0A067GC33_CITSI; Uncharacterized protein
STRINGXP_006488203.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-115related to AP2.7