PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016706m
Common NameCISIN_1g016706mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 385aa    MW: 42572.9 Da    PI: 7.2112
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016706mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17245278134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  orange1.1g016706m 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                        99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.583239275IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16239289IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14243276IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-15243302No hitNo description
CDDcd002021.24E-13244291No hitNo description
PROSITE patternPS003440245270IPR000679Zinc finger, GATA-type
PfamPF003202.7E-15245278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIGTNFMDEI DCGSFFDHID DLLDFPNEDV EAGLPNADSN SFPSIWPTQS DSLPGSDSVF  60
SNSSTDLSTQ LSVPYEDIVQ LEWLSNFVED SFSGGSLTMS KQESSTITKD DSSHNQFQTS  120
SPVSVLESSS SCSGEKTVLG SPETTAPGRR GRARSKRPRP ATFNPRPPVQ LVSPTSSVTE  180
TQPQHRLIAP KASSDSENFA ESRLVIKIPK QFNPEHKKKK KIKLSVPKVS DETSEVGPTQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH  300
KKVVEMRNKN CQKPIVAGTE TMMTDAPELI PNNNTLHWST FEGSRRLREQ HSLTGISLFR  360
SLLFAYCYFI SLFICFLYRD GMGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.40070.0flower| fruit| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436436.10.0GATA transcription factor 8
RefseqXP_006485699.10.0GATA transcription factor 8
TrEMBLA0A067E1G00.0A0A067E1G0_CITSI; Uncharacterized protein
STRINGXP_006485699.10.0(Citrus sinensis)
STRINGXP_006436435.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-47GATA family protein