PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017042m
Common NameCISIN_1g017042mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 379aa    MW: 41710.2 Da    PI: 5.1448
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017042mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573108.54.6e-34159255297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                        lfqrlwse+Dei++L+ +i++ +++g +ps+d++afy++vk+s++ +++k ql++KirrLKkK  ++ +k ak+g   +fs++h+q +++ls
  orange1.1g017042m 159 LFQRLWSEDDEIIVLKRMIEYSTEKGIDPSQDTQAFYDYVKNSLHGDYTKAQLMDKIRRLKKKCVNNLRKsAKKGGVRTFSNPHEQRAYDLS 250
                        79**************************************************************99998878999***************** PP

             DUF573  93 kkiWg 97 
                        kk+W+
  orange1.1g017042m 251 KKLWE 255
                        ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-30160255IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAPKKPNPRE EPPAASSSAE EEEEEEDDSS GSELEVSSSS SDDDGEEEEK DTQGQDHATT  60
MLPKTQKQPA LKKPEATAQT KAPSSESESE SESGSEPGAS PKPSEATKPT SSKRPNEAEN  120
KEAANAKDSK RAKKNGGADE ELHKKEPGED TKKQQPPPLF QRLWSEDDEI IVLKRMIEYS  180
TEKGIDPSQD TQAFYDYVKN SLHGDYTKAQ LMDKIRRLKK KCVNNLRKSA KKGGVRTFSN  240
PHEQRAYDLS KKLWEGSEES TGGVMALSAA KSYKKNQSQR GNNELLAALK AELLGEEGAV  300
GDKKGNAAVF FDKTLGVAGL EEFVLHDGFN MISGAKKAEL EERWKNLQVA QLKLFLQRNE  360
LIKEQALLIL EASRKTTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480465.10.0probable transcription factor At1g11510 isoform X1
TrEMBLA0A067EDA90.0A0A067EDA9_CITSI; Uncharacterized protein
STRINGXP_006428646.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-27DNA-binding storekeeper protein-related transcriptional regulator