PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g017192m

Common Name

CISIN_1g011572mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

VOZ

Protein Properties

Length: 376aa MW: 41823.9 Da PI: 6.152

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g017192m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	406.8	4.3e-125	98	314	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 pppsaf+gpkcalwdctrpa gse ++dycs+fhatla+ e++pg+tpvlrp+gi+lkd+llf+a++a++qgk vgip+cegaat+kspwna orange1.1g017192m 98 PPPSAFMGPKCALWDCTRPALGSELFEDYCSNFHATLAVSEDSPGLTPVLRPGGINLKDSLLFNAVNARAQGKRVGIPHCEGAATTKSPWNA 189 89**************************************************************************************** PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyr 184 +elfdl+llegetirewlffdk r+afesg rkqrslpd+sgrgwhesrk vmkefgg+krsyymdpqps+ +ewhlyeyei +da+alyr orange1.1g017192m 190 TELFDLALLEGETIREWLFFDKHRKAFESGTRKQRSLPDHSGRGWHESRKLVMKEFGGQKRSYYMDPQPSDGLEWHLYEYEIIGFDAYALYR 281 **************************************************************************************** PP VOZ 185 lelklvdekksakgkvskdsladlqkklgrlta 217 le+kl+ ekks+k kv+kdsladlqkk+grlta orange1.1g017192m 282 LEVKLASEKKSPKVKVTKDSLADLQKKMGRLTA 314 *****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MKPQPDVQGH PGTMMAFQED YVVNNELQGH CFQGFDKCED SASGLHNPTV GISGLTTQLD 60 YSHLIFRQEL ENLLLDGVNG TEECEKDIGP NSLPIIHPPP SAFMGPKCAL WDCTRPALGS 120 ELFEDYCSNF HATLAVSEDS PGLTPVLRPG GINLKDSLLF NAVNARAQGK RVGIPHCEGA 180 ATTKSPWNAT ELFDLALLEG ETIREWLFFD KHRKAFESGT RKQRSLPDHS GRGWHESRKL 240 VMKEFGGQKR SYYMDPQPSD GLEWHLYEYE IIGFDAYALY RLEVKLASEK KSPKVKVTKD 300 SLADLQKKMG RLTADVPVDN KSSFKGKIET NGKVDSANVN SSQNEMTSAT EILHHGSSSP 360 YKYLADNSAD YYHKY*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MKPQPDVQGH PGTMMAFQED YVVNNELQGH CFQGFDKCED SASGLHNPTV GISGLTTQLD  60
YSHLIFRQEL ENLLLDGVNG TEECEKDIGP NSLPIIHPPP SAFMGPKCAL WDCTRPALGS  120
ELFEDYCSNF HATLAVSEDS PGLTPVLRPG GINLKDSLLF NAVNARAQGK RVGIPHCEGA  180
ATTKSPWNAT ELFDLALLEG ETIREWLFFD KHRKAFESGT RKQRSLPDHS GRGWHESRKL  240
VMKEFGGQKR SYYMDPQPSD GLEWHLYEYE IIGFDAYALY RLEVKLASEK KSPKVKVTKD  300
SLADLQKKMG RLTADVPVDN KSSFKGKIET NGKVDSANVN SSQNEMTSAT EILHHGSSSP  360
YKYLADNSAD YYHKY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.10030	0.0	flower\| fruit\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446732.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-124	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A067DW12	0.0	A0A067DW12_CITSI; Uncharacterized protein
TrEMBL	A0A067E3E4	0.0	A0A067E3E4_CITSI; Uncharacterized protein
STRING	XP_006446732.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-127	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	orange1.1g017192m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]