PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017237m
Common NameCISIN_1g017237mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 376aa    MW: 42695.5 Da    PI: 8.1874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017237mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.5e-1437121797
                        .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         ++ l  + l++p kf++++g +   s+  +l+ +sgr W v+l  rk  ++ ++  GW eFv+   +++g f++F+++g+s+f  +v ++
  orange1.1g017237m  37 VPSILHDKKLRIPDKFVKKFGDE--LSTVAKLTIPSGRLWLVEL--RKLNKKLWFDIGWHEFVEHCSIRAGYFMIFRYQGNSDF--NVYIY 121
                        345555667*********99865..8999***************..999999********************************..66665 PP
2B371.51e-22268361198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+ vl ps+v ks +l +p  fa+++ +g+k +  ++tl+ ++g++W+v++i ++++    +++GW+eFv +n+L+e D++vF+l+++++ +
  orange1.1g017237m 268 FKVVLRPSYVYKSLLLHIPSIFARTYlNGIK-G--DVTLTGPNGKQWRVRCISQNGK--AKFGQGWSEFVWDNNLDESDVCVFELVKTDDVT 354
                        667889********************85554.3..7***************655555..569****************************** PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                        l+v++fr
  orange1.1g017237m 355 LKVTIFR 361
                        *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2126122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2030122IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-1531122No hitNo description
PROSITE profilePS5086312.73131124IPR003340B3 DNA binding domain
SMARTSM010192.2E-1132124IPR003340B3 DNA binding domain
PfamPF023622.2E-1138121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-26261361IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-26263364IPR015300DNA-binding pseudobarrel domain
CDDcd100176.53E-23266361No hitNo description
SMARTSM010191.5E-19268363IPR003340B3 DNA binding domain
PfamPF023625.4E-21268361IPR003340B3 DNA binding domain
PROSITE profilePS5086314.762268363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MSEQQTTHGE AMSQPLAPYL PEEENQKRSC IFYKLIVPSI LHDKKLRIPD KFVKKFGDEL  60
STVAKLTIPS GRLWLVELRK LNKKLWFDIG WHEFVEHCSI RAGYFMIFRY QGNSDFNVYI  120
YDLAKSEIEY PFNTCSSLEE EPSGNKQCSV PIDKDKGEDN SFGISKPSSS PCPVLSPSTI  180
NVEDEGAYYK KNKNSTSGVK LKYLHLAEEV HNQEATFQSP QDKGIIQFKS NVTNKSDEVG  240
LRGRALTSEE KKSALRAAEI FKSNNPFFKV VLRPSYVYKS LLLHIPSIFA RTYLNGIKGD  300
VTLTGPNGKQ WRVRCISQNG KAKFGQGWSE FVWDNNLDES DVCVFELVKT DDVTLKVTIF  360
RVLQDARSEE CQPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-4024236223142B3 domain-containing transcription factor VRN1
4i1k_B4e-4024236223142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479394.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_024035722.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A067EAJ20.0A0A067EAJ2_CITSI; Uncharacterized protein
STRINGXP_006423108.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112428103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-79B3 family protein