PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017384m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRF
Protein Properties Length: 373aa    MW: 40891.7 Da    PI: 7.7177
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017384mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.4e-2480123144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                        d+ep+rCrRtDGKkWRCsr+v + +k+CErH h++r rsrk++e
  orange1.1g017384m  80 DPEPWRCRRTDGKKWRCSRDVAPEQKYCERHSHKSRPRSRKPVE 123
                        79***************************************987 PP
2QLQ57.54.2e-201348237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       aFTaaQlq+L++Q l+yKy++a++P+P+eLl++i+k
  orange1.1g017384m 13 AFTAAQLQELERQTLIYKYMMASAPIPHELLLPITK 48
                       7*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-101248IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-141346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.7541348IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.82680124IPR014977WRC domain
PfamPF088793.0E-1981123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MAAAAAAVNL RLAFTAAQLQ ELERQTLIYK YMMASAPIPH ELLLPITKSP STSRVLPSCQ  60
PNMVQGSMEL RLLSNNSSSD PEPWRCRRTD GKKWRCSRDV APEQKYCERH SHKSRPRSRK  120
PVELPAHRGH NSSLHQSVHN STLNKSYPKY MASSIALSEQ QEQPRSLEWF MKGETMPVAS  180
NSNQEWLQNT SKYGGHHHHH KEHLINSNNL SGDDLAFDAQ RLHDQYSLLL SPKMVSHHAQ  240
QTQETRHFID AWSLGLGGEN MADEDGMGST SNCFVSSNEK LPLSSLTLSM SGGNETIERN  300
ENALMASLGT MGSERENAGA LRPHWMNHVS GMGSPPGGPL AEVLCLGTAS SVKSDSNAAS  360
PHGCSTSTTT SS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.35810.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-52DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439212.10.0growth-regulating factor 7 isoform X1
TrEMBLV4TGH00.0V4TGH0_9ROSI; Uncharacterized protein
STRINGXP_006439212.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.13e-31growth-regulating factor 8