PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g017473m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 372aa    MW: 42729.3 Da    PI: 6.9309
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g017473mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.53.1e-24121318128
                NAM   8 hPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        +P+d el+ + Lkkk  + +++    ik++ +i+++ePwdL +  ++++e++ +yfF k +  y++++ ++rat++g Wk t k  ++ + +
  orange1.1g017473m  12 QPSD-ELILCLLKKKRLDPHFSY-GPIKDIgHICSLEPWDLATesETDSEDQTCYFFYKPR--YTKSNDAHRATNAGSWKVTRKVSQIEA-R 98 
                        5776.7999********999999.88****99*********84235566777889999875..5667799*******************9.8 PP

                NAM  97 gelvglkktLvfy.kgrapkgektdWvmheyrl 128
                        + l+g+kk+L+fy +g  +k   t+W mhey++
  orange1.1g017473m  99 NGLTGTKKSLTFYlRGLPRKEAITEWGMHEYHV 131
                        889**********888899999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.4735149IPR003441NAC domain
PfamPF023651.8E-1110131IPR003441NAC domain
SuperFamilySSF1019412.75E-2714148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MESHMREWYK SQPSDELILC LLKKKRLDPH FSYGPIKDIG HICSLEPWDL ATESETDSED  60
QTCYFFYKPR YTKSNDAHRA TNAGSWKVTR KVSQIEARNG LTGTKKSLTF YLRGLPRKEA  120
ITEWGMHEYH VKDDPSYEKE FVLCRIFRRR NKKKRGISTT DEGESSEQLV SSPQQSPCDH  180
SISNGNHSEE STHTIPQQQL QYHNSISYPR NLNVQNTFAY PQSITDDSPT QLSPGNHSEG  240
TTHTYPQQLP NHNSISYTGN RIEQNMYLLK YLPNYSPAQQ LPCDHFISAR NYSEEYVPIN  300
QQPQPNDNLI SHLGSQIEGF SPTNSLLPQN SNLEWQLPLH HPLEIHNSAE NPFRKDVSQL  360
EKSRHTVATI G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384482.10.0uncharacterized protein LOC102631278 isoform X2
RefseqXP_024039823.10.0uncharacterized protein LOC112098262 isoform X2
TrEMBLA0A2H5QBT60.0A0A2H5QBT6_CITUN; Uncharacterized protein
STRINGXP_006465069.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-19NAC 007