PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g017704m

Common Name

CISIN_1g0112712mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 368aa MW: 41422.2 Da PI: 7.5253

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g017704m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	130	170	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE ++l ++++++ + + Ia +++ Rt +++k+r++ orange1.1g017704m 130 WTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYY 170 *****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	8.0E-31	102	176	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	3.2E-6	126	175	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.48E-6	126	172	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.6E-6	129	171	IPR009057	Homeodomain-like
CDD	cd11658	1.15E-18	130	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MDAKDILGIP KTQLPTTQEK KSRPQKEPQR KPDGISREVY ALTGGLAPLM PSIDVSQLKK 60 RPPSDEKITW QWLPFTNSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVVKYTDEE 120 YEKYLTDPMW TKEETDQLFE LCERFDLRFI VIADRFPSSR TVEELKDRYY GVSRAILIAR 180 APSPTDVSGH PLVKDPYNVS QEVERKRALS MVLSQTKHQE RKDAEVLAEA KRITDSRMAS 240 RAAEEPEMPV ASHVGSESAD RAVVLGDTVS PSSNIQLPSA TVVPSTSIIA DSASTLASLR 300 MLRVYLRTYA LEQMVQAASS SAGLRTIKRV EQALQELGVC SCFLNCECHA YTHFYCHVIY 360 HSVMLFL*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MDAKDILGIP KTQLPTTQEK KSRPQKEPQR KPDGISREVY ALTGGLAPLM PSIDVSQLKK  60
RPPSDEKITW QWLPFTNSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVVKYTDEE  120
YEKYLTDPMW TKEETDQLFE LCERFDLRFI VIADRFPSSR TVEELKDRYY GVSRAILIAR  180
APSPTDVSGH PLVKDPYNVS QEVERKRALS MVLSQTKHQE RKDAEVLAEA KRITDSRMAS  240
RAAEEPEMPV ASHVGSESAD RAVVLGDTVS PSSNIQLPSA TVVPSTSIIA DSASTLASLR  300
MLRVYLRTYA LEQMVQAASS SAGLRTIKRV EQALQELGVC SCFLNCECHA YTHFYCHVIY  360
HSVMLFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	1e-21	101	186	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	1e-21	101	186	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444556.1	0.0	SWR1-complex protein 4 isoform X1
Refseq	XP_006492372.1	0.0	SWR1-complex protein 4 isoform X1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A067HG50	0.0	A0A067HG50_CITSI; Uncharacterized protein
STRING	XP_006492372.1	0.0	(Citrus sinensis)
STRING	XP_006444556.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Link Out ? help Back to Top
Phytozome	orange1.1g017704m

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]