PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g017891m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

MYB_related

Protein Properties

Length: 365aa MW: 40717.2 Da PI: 9.4308

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g017891m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.5e-07	44	84	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE ++l ++++++ + + Ia +++ Rt +++k+r++ orange1.1g017891m 44 WTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYY 84 *****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	7.9E-31	16	90	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	3.2E-6	40	89	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.48E-6	40	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-6	43	85	IPR009057	Homeodomain-like
CDD	cd11658	1.02E-18	44	84	No hit	No description
Pfam	PF05499	4.2E-7	234	296	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNWVRVVNGV PPTGDYSFAK YNKSVDVVKY TDEEYEKYLT DPMWTKEETD QLFELCERFD 60 LRFIVIADRF PSSRTVEELK DRYYGVSRAI LIARAPSPTD VSGHPLVKDP YNVSQEVERK 120 RALSMVLSQT KHQERKDAEV LAEAKRITDS RMASRAAEEP EMPVASHVGS ESADRAVVLG 180 DTVSPSSNIQ LPSATVVPST SIIADSASTL ASLRMLRVYL RTYALEQMVQ AASSSAGLRT 240 IKRVEQALQE LGVNLKPKVP TKAVCAEHLE LRKEILTLLN LQKQLQYKEA EGSSYRDGSY 300 IDMPGTPKRS QRAGDQDRTF VPESINFGGE RVGKRDQKRK GPGRLSEAPS SPAHKRPRKK 360 ASDL*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNWVRVVNGV PPTGDYSFAK YNKSVDVVKY TDEEYEKYLT DPMWTKEETD QLFELCERFD  60
LRFIVIADRF PSSRTVEELK DRYYGVSRAI LIARAPSPTD VSGHPLVKDP YNVSQEVERK  120
RALSMVLSQT KHQERKDAEV LAEAKRITDS RMASRAAEEP EMPVASHVGS ESADRAVVLG  180
DTVSPSSNIQ LPSATVVPST SIIADSASTL ASLRMLRVYL RTYALEQMVQ AASSSAGLRT  240
IKRVEQALQE LGVNLKPKVP TKAVCAEHLE LRKEILTLLN LQKQLQYKEA EGSSYRDGSY  300
IDMPGTPKRS QRAGDQDRTF VPESINFGGE RVGKRDQKRK GPGRLSEAPS SPAHKRPRKK  360
ASDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	7e-22	15	100	4	93	DNA methyltransferase 1-associated protein 1
4iej_A	7e-22	15	100	4	93	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492374.1	0.0	SWR1-complex protein 4 isoform X3
Refseq	XP_024043723.1	0.0	SWR1-complex protein 4 isoform X3
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	V4U6K6	0.0	V4U6K6_9ROSI; Uncharacterized protein
STRING	XP_006492372.1	0.0	(Citrus sinensis)
STRING	XP_006444556.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Link Out ? help Back to Top
Phytozome	orange1.1g017891m

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]