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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g018368m |
| Common Name | CISIN_1g018368mg |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 358aa MW: 39767.1 Da PI: 9.7253 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g018368m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 387.5 | 2e-118 | 23 | 357 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllall 85
mdd g+re r+k+ +y+ a + l +++ +q+m+++aerda+++ernla sekkaa+aerdmaflqrd+a+aern+a++erdn++++l+
orange1.1g018368m 23 MDDGGHREngRHKAdQYKAAqgQWLMHHQpsMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQ 114
9*****999*****99*9544433433331145*********************************************************** PP
GAGA_bind 86 lvensla...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
++ensl s++p+g+q+++g+k++++ qq+ + +++++ a+ re+++ +alp++ a+ea + ++ k r +ke+k +++kk++
orange1.1g018368m 115 YRENSLGgnmSSCPPGCQISRGVKHMHHPQQHVHqlHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYK---R---AKEPKVLSPNKKTA 199
****9878889********************55545555565555.**********988666665555554...4...44444445555555 PP
GAGA_bind 173 kskkkvkkesader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
ks +kvk+e++d + sk+++k + l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqSaCC
orange1.1g018368m 200 KSPRKVKRENEDLNkvvfgkpsewksvqdldggdddvnkqstaSKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 291
6667777777664447788889999******************************************************************* PP
GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tt++S+yPLP+++++r+aR++grKmS++af+klL +LaaeG+dls+pvDLkdhWAkHGtn+++ti+
orange1.1g018368m 292 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 357
*****************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MSIFFCWVAY LLLANSTFCA SQMDDGGHRE NGRHKADQYK AAQGQWLMHH QPSMKQIMTI 60
MAERDAALQE RNLATSEKKA AIAERDMAFL QRDTAIAERN NAILERDNAI ASLQYRENSL 120
GGNMSSCPPG CQISRGVKHM HHPQQHVHQL HHVSEAAYSR EMHTGDALPV SPGASEAAKP 180
RRYKRAKEPK VLSPNKKTAK SPRKVKRENE DLNKVVFGKP SEWKSVQDLD GGDDDVNKQS 240
TASKSDWKGQ VLGLNQVTFD ESTMPPPACS CTGVLRQCYK WGNGGWQSAC CTTSLSMYPL 300
PAVPNKRHAR VGGRKMSGSA FNKLLTRLAA EGHDLSHPVD LKDHWAKHGT NRYITIK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
