PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018673m
Common NameCISIN_1g018292mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 353aa    MW: 39690.9 Da    PI: 10.126
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018673mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.4e-1271124155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n+   k+ k+++       e Aa+a++ a++k++g
  orange1.1g018673m  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVY------LEAAARAYDLAALKYWG 124
                        57*******************6666555564458888......7**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-1171133IPR016177DNA-binding domain
PfamPF008472.4E-871124IPR001471AP2/ERF domain
SMARTSM003801.5E-1872138IPR001471AP2/ERF domain
PROSITE profilePS5103215.39672132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-972133IPR001471AP2/ERF domain
PRINTSPR003673.1E-57384IPR001471AP2/ERF domain
PRINTSPR003673.1E-5114134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMASSSSDPG LKHEVGSSSG CGGGGESSEA VIANDQLLLY RGLKKAKKER GCTAKERISR  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLEA AARAYDLAAL  120
KYWGPGTLIN FPVTDYTRDL EEMQNVSRED YLASLRRKSS GFSRGISKYR GLSSRWDSSL  180
ARMAGSEYFN NAHYGAADDP STESEYLGGF CIDRKIDLTS YIKWWGPNKT RQADSAKKSL  240
EEGKHAYAED ISSELKKSEW EIRPTEPYQM PRLGVSPGGK KHKGSAVSAL SILSKSTAYK  300
NFQEKALKKQ DSNTDNEKMR TKILLTKWTM VRLLRNQRVM MVGVRDLELH LE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.114740.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421325.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-129AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A067EAI60.0A0A067EAI6_CITSI; Uncharacterized protein
STRINGXP_006421325.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-128AP2 family protein