PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g018923m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 350aa    MW: 39161.9 Da    PI: 6.4375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g018923mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.9e-16116167155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  orange1.1g018923m 116 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 167
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.6671581IPR001471AP2/ERF domain
SMARTSM003802.4E-54087IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-84183IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-74982IPR001471AP2/ERF domain
CDDcd000181.09E-24116177No hitNo description
SuperFamilySSF541719.81E-18116177IPR016177DNA-binding domain
PfamPF008475.4E-12116167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17117176IPR001471AP2/ERF domain
PROSITE profilePS5103218.334117175IPR001471AP2/ERF domain
SMARTSM003801.2E-24117181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAKLSQQSQK SNANNNNGVT KVKRTRRSVP RDSPPQRSSI YRGVTRQSIS VSAYDDEEAA  60
AHAYDLAALK YWGPDTILNF PLSTYQKELK DMEGLSREEY IGSLRRKSSG FSRGVSKYRG  120
VARHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAATAYDM AAIEYRGLNA VTNFDLSRYI  180
KWLKPNHQIN PHLIDTTSPS SSSIINNGNN SDYNHQESNS SFFNNNNQSG STVRDQPPTT  240
TLFTDHYHQP AVRPVSATSA LGLLLQSSKF KEMMEMTSSS EADNHHCSSL TPSTESSDPL  300
QCSFPEDIQT YFGGCQDSSN FGEGDDDDDV FFRELNSFVP PMFQCDFDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453545.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-75AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV4UR260.0V4UR26_9ROSI; Uncharacterized protein
STRINGXP_006474614.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.17e-63ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]