PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019261m
Common NameCISIN_1g019261mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 344aa    MW: 38427.9 Da    PI: 7.146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019261mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.64.4e-3299208199
                        EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                        f+k ltpsdv+k++rlv+pk++ae++           ++++ ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+++
  orange1.1g019261m  99 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggggadlgSSSSDKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVIL 190
                        99*****************************999998555558889********************************************** PP

                        EEE-SSSEE..EEEEE-S CS
                 B3  82 Fkldgrsefelvvkvfrk 99 
                        F+++++++++l+++++r+
  orange1.1g019261m 191 FERHRTDSERLFIGWRRR 208
                        **98889999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.0E-4194213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-3195207IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-2997199No hitNo description
SMARTSM010191.6E-2699209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.84699209IPR003340B3 DNA binding domain
PfamPF023623.0E-2999208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMETTQNSSN NSSSSATDPQ QQQQQLSSWS SPHHHQFYHH HQQHQHHLWL DSYNNNNNNS  60
HHNPTLSFNL NSQHDATEAQ PMTNLNSNQE QELEKEPMFE KPLTPSDVGK LNRLVIPKQH  120
AEKYFPLGGG GADLGSSSSD KGLLLSFEDE SGKCWRFRYS YWNSSQSYVL TKGWSRYVKE  180
KRLDAGDVIL FERHRTDSER LFIGWRRRGA TAVAQVAQAG GAAAGGCGWP RGLYPNHPYP  240
VDVAHGHGVS APLYQHAGSG VQSQTTSVGN SRTLRLFGVN LECQVDDKSE GSESQAEAHG  300
HQQFNYSVEA YDSNSTNRHN HVVGQFNCLC YRHGVIANKI MSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-49942083113B3 domain-containing transcription factor NGA1
5os9_B1e-49942083113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386871.10.0B3 domain-containing protein At5g06250 isoform X1
SwissprotQ9FNI33e-70Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A067G4930.0A0A067G493_CITSI; Uncharacterized protein
STRINGXP_006481711.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.24e-62B3 family protein