PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019446m
Common NameCISIN_1g017825mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 342aa    MW: 37380.7 Da    PI: 10.1227
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019446mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.54e-32153209158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  orange1.1g019446m 153 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF 209
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-36151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.491152212IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-27154209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23155177IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860157177IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MLRSMHQNKS SNSSGPEANS NNSFTISSQP WWRGVGHDST SRAMLQGGIG NISSPREPIN  60
GVLVAKTSKS QVNSGMDGGA DATKEMLMSV ASQADGKFGG QQPSQHSVSL MHPQFSEYLT  120
QPSQLELVGH SIVHPQSMGV HSARMALPLE MAEEPVYVNA KQYHGILRRR QLRAKAELER  180
KLIKVRKPYL HESRHLHAMR RARGCGGRFV NTKKLDSQTS NGTVTNGTSL NVAVSTLPPN  240
SSKSESVATN YSRGTADLST GCREVTEPQV HKMQQQQRCS NGNGQTYYEG NGNGCYSHHQ  300
GFQLFKCHSL PDNKVEEGDF SGQQSGRIVE NRAQHRALTI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20153217266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044827.10.0nuclear transcription factor Y subunit A-1 isoform X2
TrEMBLA0A067ES480.0A0A067ES48_CITSI; Uncharacterized protein
STRINGXP_006489920.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-37nuclear factor Y, subunit A1